CI01000009_03009238_03025860


Basic Information

Item Value
gene id CI01000009_03009238_03025860
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3008360 ~ 3025937 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59817
GGGAGAGAGAGAAAGAGAAAGACGGGCAAATAGAGAGAGAGAGAGTAGGAGGGGGCGGTAGAGAGTTTAAATTCAGTGACAGTGATAATGATATTATTCGGTCTCCGCTGAAACGGGGAAGCACTTTCAGAGTCTACGGCACACTTCCTCTGTCTCTATCGCTTTAAGAGTGTTACTGATTAGTCGCTAAAGAATGCGAGTGGAAAGAGAGAGAGAGAAAAAAAGGGACAGAGGCAGGAGGGAGAGACAGACCGAGAGTGTTGGAGCCTGGGAACTCATATGGAGAAGACTGATAATATTGAGCTGAGTAGAGATTTGTTTTATTTTCCAGCAGTTCAGAGACGTTAAAGGAGCTCTCACTCTCTCTCTCTGAATTTGCTGCTCCTGAAGAGGCTGGACGAAGGGGGAAGTCGGGGACCCCGCACATGCAGGCAGCGCTCAGCCATCAGGAAATACTCTTTTCACCCAGACAGAGGTTATTCAGACTGGCTCAATCTATTCAAGATCACATAATGCTCCATGTCTTCATTTCAATTTAGGCGCTGAGGATGGCTCGAGTGGACGACCGCTGCCGGTGACTTTTTAGGGTGCTCATGA
>CI01000009_03009238_03025860.mRNA
ATTGTTTATGTGATTTGAGATTGTTTTCCAAGTGAAGCGCTCATCATCTCTGGAGATTATTTGAGTTGTGATGAAGAATGGCTGTTGGTGATCGCCCACACGCAAATGTGAAATATTCTAATGAGCAATCTGTCTCACTTGAGTGTCATCTAGCTGTGCCTCAGATGATGATTCCTGAAACAGGACAGACTTGCTCATCCTCCGCCGTCATAACACCGACAGAGACTCGCTATGGATCAGAGTCCGGTTTTTACCCTGAATCACACGCGAGGGCAAAGGCGGACAATACAGTAGCACCAGGAAGTCTGCAGGGGATGTGTGATGGCGGACTGTGCGCCCCTCTTAAATTAAAGACAAAGGGACACAGGCTGAGACTGTGGATATACGCAAGGGGGAAGCGTGGACCAGAGCGGATGGGGTCACTGTGGCGCAAGGCGGGGGTCCCGCATCCTGAGTTTATAGGGACAACCAGAGGCGGCAGGCTGGGGGAACGAGGGTCCTGGGCGTGTGTCAGTGTGAGCGAATGTTTCACATTCCTGGATCAGGGTCAGATTCGCCTCCACTCACCGGCTCAATCCCTCATTGTCTTGTCAGCTACAGTATGTCAAACAGATGGTTGGCATGGTTACAAGCCACCTAATATAGCCATCCAGTGCCCAGGACCAGACTGGCAGAGACCGCCATGGCGGGACCCGGCAGGCATGCACACAAGCCACGAAACTGTGCTCGAGGAGACGCGAGTGGGAGGTCGTAGTTTATCTGGTTCCAGTGAGGTTGCTGAGGGCAATTTTGGCAGGCTGGACGAGTCTTTCATCTTTACATTTATGGTGGTGTTGGCAGCTATAGCTCACACCTTTTACACCACAGCAATCAGTTCAGAGACGTTAAAGGAGCTCTCACTCTCTCTCTCTGAATTTGCTGCTCCTGAAGAGGCTGGACGAAGGGGGAAGTCGGGGACCCCGCACATGCAGGCAGCGCTCAGCCATCAGGAAATACTCTTTTCACCCAGACAGAAACAAAAAACTGCTCAGGGCTGCATACAGTATGTTTATCTTAGTGAAGAGCCAATCAGAATAGAGACAGTAGATTCGGCCCTCTGCCCAGCTGTTGTCCTTCAGGATCTACTATGGCTTTTTAGAGGAAGAATTGTCAGACTTACACTCCCTGTAGAGGGAGTGGTGGGAGTGACTGGTGTGGGGAGCCGCTGGCACGTTCCACCCATGTGGAGTGCTTTCGTATACATGGCTCTATGTCTATGCCTCCCTACTGCTGATGTAATGAAAGTAAGGAAACGCAATGGAGGGGGGCAGACAGAGAGAAGGTGTAATGCTATACGCTTCAGTGTGCTTCGAGAGTGGGACCGAGCCCAGGGCAGCACTGGGAGTTGTTCGTGCTGGGGAATAGAAGGCTTTTGCTCTCCAGGCCAGCGTGTGAGTGGGTGTGCTGTGGGCCAGACTCCTTTATTCTCTCTTAATCTTTCTCTCCCTTCTCGCTCGAGCCTGCGCTTCTGCCAAGGACTTGTAAAGGGACTGCAGGCTCTGTTATGTGCCAGCTCTTTCCCATCAATACAGCCCTCTGGAAAGAGTCTCTCGCTTCTCCTCACCGAAAGCCGAAAGTCCAGTTCAGAGCTTCCAGTAGCTGGTCTCCGAATGGCAGGAAAGCGTGTGCGTGCGGCTTTTCGTGTATGTGGGGCAAGTGGGCTTAGGGGAAATGAAATGAATCTCCCTTACACCTTTCACGAAGCTGGGGCCAAACTCTCCACGTACGATCGTATCAACAAAACCCTATCGAGGCTGATTATCAAAACTCGGCTACCCAGATGCAATCCCTCATCAAGCCTGATTAAAAAGGTCATGTATCTAAGTTTTTGTTTTCCTCATTTTTCTTACAGGGTTATTCAGACTGGCTCAATCTATTCAAGATCACATAATGCTCCATGTCTTCATTTCAATTTAGGTCATTCATGTGAAGTCGCGGGCTGGGGCTTCTCCTTAGGGGCAGACAATAGTGTTGCAGCAGGAAGCACATACCTCCCTCGAGAGCCTCACGGCACGCTCCCCCACCCTTTTGTAGCATGAAGCAAATTAGGAAAAGGCTTAATGGGGTGGTAGATGCATGTATATTTGTAACTTCATCACATGAATTGTTTAGTTTACTTAAAGCATTGCTTTTGTGATTCACGTCTTTACAAAGTGCCCGTTCATGCATTCAATTTCATAGCCTGTTGTTGGTGCTGCCAGGAAAAAATACAACAAGGATGTAAATGGAATAGAATGAAACAATATAGCTGTCAACATCAGCTGTCACTCTGGAAACGAAACAGCAAATTTTGACAGAATTTTTAAACCCTAGAATCCAAAGCACTTTACAGTCAACAAGGTCAGACAGTCAGTTTTTCATTTAAACCGCATAATCATAACTTTAGCTTAGCATAAACTAAGCCCACGTTTACAAGGCACAACAACACAGAGATCCATTCTACCAGTACCATTCTATTAAGGCCACTCTCACATGACAGTTCACTGTTCACTAAATGGCCTTAACTGTTTCATAAAGACTCACTTACAAAAGAGTACTGTGGCCGTACCATGGTACAGTGATAGTATCTTGTCGTACTTTGATATATGGGTCAATGGTGTGACAATAATTTTTTTGTTTTTGTCTATCTACACTACCGTTCAAAGGTTTGGGGTCTTTAAGATTTTTTTTAGATATATATATTTTTTAAAAGAAGTCTCTTTTGTTCACCAAGGCTGCATTTATTTGATCACACATAGACTGTAATGTCAGAGCCATAGCCTTGTGGACAGTGCTCCAACATATGGCGCAGTAGGCACTTCAGACAACCTGAGATTGAGTCCTGGCTCGAGGCCATTTCCCCCCCTTTCCTCCCATTGCTTCTTGTCGCCTTTACACTGTTCTAAGGCAAAAGGCCAAAAATATAACTTATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59817 True 539 lncRNA 0.48 2 3009778 3017660
CI01000009_03009238_03025860.mRNA False 2956 mRNA 0.47 15 3008360 3025937

Neighbor

gene id symbol gene type direction distance location
CI01000009_03006152_03007243 NA coding downstream 505 3005386 ~ 3007855 (-)
CI01000009_02975388_02982670 NA coding downstream 22969 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 90810 2915641 ~ 2917550 (-)
CI01000009_02904768_02914992 EFHC2 coding downstream 93113 2904691 ~ 2915247 (-)
CI01000009_02885473_02893975 NA coding downstream 114385 2883688 ~ 2893975 (-)
CI01000009_03140599_03143635 SLC35A5 coding upstream 114662 3140599 ~ 3143635 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 145503 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 199831 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 209077 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 217661 3243598 ~ 3259106 (-)
G52553 NA non-coding downstream 12455 2995649 ~ 2995905 (-)
G52489 NA non-coding downstream 95015 2913118 ~ 2913345 (-)
G52488 NA non-coding downstream 95818 2912305 ~ 2912542 (-)
G52478 NA non-coding downstream 184432 2822962 ~ 2823928 (-)
G52556 NA non-coding upstream 19952 3045889 ~ 3046097 (-)
G52557 NA non-coding upstream 23161 3049098 ~ 3049653 (-)
G52566 NA non-coding upstream 45224 3071161 ~ 3071388 (-)
G52518 NA non-coding upstream 56054 3081991 ~ 3082437 (-)
G52589 NA non-coding upstream 121991 3147928 ~ 3149432 (-)
G52410 NA other downstream 445827 2551724 ~ 2562533 (-)
G52098 NA other downstream 1600733 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 235266 3261038 ~ 3262843 (-)
G52828 NA other upstream 1191483 4217420 ~ 4231469 (-)
G53515 NA other upstream 2476458 5502395 ~ 5505248 (-)
G55814 NA other upstream 5399884 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5832215 8856310 ~ 8860563 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location