G74461


Basic Information

Item Value
gene id G74461
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17961696 ~ 17964775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100330
AACAGATGAtggttaattttattttatgttctgAGCAGCCAGTTAGAACATATTTAAAATGGTACAATCAGACTTAATAAATCAAGTCATTACCCAAAAACATTATGCTACTGGTAGAATTGAGCTGGCAGTACAATACCTGGACTACAACAATGTTACCAAGTATAGAAAGCAACAGGATAAACAGACCAAACATTTGATCAAAAACAGAAAGGCAtgatgaaaatgtattttgtaaagGTTCTGTGATAACTCTTCTCCATATCTCTACAGGACATTAAGGCAAACAGGCCTATAGTAGCAATCCCAGCACAGTTACAGACATGCCTCCCACCCAACAATGCCCAGGCTAGAAGGGGAGTGATGAACATCACTTCTTCAGAGCCTCCGTCATCTCAGGAACAGCCTAtgagtggagaaaaaaaaaaacaTGTAAGACACGTATTGCTGGTCAGACAAAAACCTTGTTTCCTCTAAATGGTCACTTTAGGGGAAAATTAGCTAAATCTGTAATGTAAgccaatgtttaaaaaaaaaaaaaagattccttGTCAATGTGGATTTCTATAGGGCcagtaataattaaaatttttaacaaaattaagaAAAGTGGCATGAAAAATTACACTTAATATACAGTTCCCCAACAAAGCTGTCTCCTTGTGCAAACCAATACTCGTCTCTTCCCATTTAGAGAAGCCTGAATATATGACAGAAGGTTTTCAGTGCACACAGGTCTTTCCTTTAGGGCCAGGTTTCTCAACAGCCAGACTGGCATGTAACCATCCTACCAGGTCAAAGCAGAGGTTGTGTGCGATGCAAAGCAGATGAAAAACTATATGATCACCCGAATATGTCACCCAGATCAGTTTTCAATTTAAGGAAGGAGAGAAAGCCCATCCATTTTAATCAGTTATCTGAGTAGTGATCACATGTAAGCTGATCTGAGAGCAGCTTCAGCTCAGCATTTGCTGTCTATCATTACCAATCACTTTTACAGAGTTTACTCACACACCTGCGCCAAGCACCACACAGgctaaataaaacatgaacGACAGGGCAAACACACGGAAATAAATACCGTTAGGCTTACAGGCGCTAAACACCAACAACAGACGGATGCTGGAGTGTGTGGCAACCCCTGGCACACGCAGCCTGTGTGCCACTCAAAAACCACAGAAGCCAGTGGGCCATGTAAAGCATTGGCAAAGGGGCACTGAAAATAAAGGTGAAAGCTTACACCCCAAACACTTGTGACAACTATCAATTACTTTTCTAGTGTaaaggaaagagagatacaTGAAGGCTCCAGTTCAGGACTGGACTCCTCTGATTAATGCAGGACCTCAATAATTCAGCACAAGCGCGTTTCCATTAGCTGGAATAATGCGCACTGCAAAATTTATCAGGGAAACTCAGTCATTTCTCCAGATGATTTTTTGGTTTCTGCATTTCCTCCCTTTCCATCAGGTAAACATGTGGTTAATACCACATTGGGTCAGTGGGTATATGGGAGTAGGCGAGACCCCGACCATGTGTATCCAGTAACACTTCAGGGGgagatttttgatttttttttattgttatcgtGAAGACAAGGGAAAAACTAAGTCTTTAAAAACCCAGACATTACAACACATGCACCGAGGTATTTGCGAGTAAGACTTTGCCTGAAATTACAATTATTTCCGTCTTTGGGGTGTTTTGATGTCACCTTTTGCAAGGGACTCTCACCCTTTACAGTACTAGCATAAATCATATCAGCTTTTTCCTCTGAGTTGATGGAAATATTTTCAACAACTGAAAAAAGGAATCTCAG
>TU100332
AACAGATGAtggttaattttattttatgttctgAGCAGCCAGTTAGAACATATTTAAAATGGTACAATCAGACTTAATAAATCAAGTCATTACCCAAAAACATTATGCTACTGGTAGAATTGAGCTGGCAGTACAATACCTGGACTACAACAATGTTACCAAGTATAGAAAGCAACAGGATAAACAGACCAAACATTTGATCAAAAACAGAAAGGCAtgatgaaaatgtattttgtaaagGTTCTGTGATAACTCTTCTCCATATCTCTACAGGACATTAAGGCAAACAGGCCTATAGTAGCAATCCCAGCACAGTTACAGACATGCCTCCCACCCAACAATGCCCAGGCTAGAAGGGGAGTGATGAACATCACTTCTTCAGAGCCTCCGTCATCTCAGGAACAGCCTTGAACAAGTCAGCCACCAAGCCATAATCTGCAACTTGGAAGATGGGAGCCTCAGGATCCTTGTTGATAGCCACAATAgtCTTACTGTCCTTCATTCCAGCAAGATGTTGAATAGCTCCAGAAATTCCAACGGCAATATACAGTTCCTAGAGACAGGAGGAATAGTTTAGTATTACTTTCAGAGAACAGACATTGACAAATTACTTCAAATTGCTTTCAATTTAACCACTTATAATCTAAACATTACACTAAACGTTACACTAATTTATCTATCTAATCAAATCATTCTCTTTATCTGTACTTTCACAGTAATGAATCGTTTGAGAACAGAAGCAGAATATGCTTTCAGGACCCTGCTGAGCTCTCCCCTAATTGGTTGATGCCTCAGGCACCAATATGGCAGGTACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100330 True 1819 lncRNA 0.40 2 17961696 17963537
TU100332 False 816 lncRNA 0.39 3 17961696 17964775

Neighbor

gene id symbol gene type direction distance location
tmem266 tmem266,LOC107557978 coding upstream 35 17887308 ~ 17961661 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding upstream 85457 17868563 ~ 17876239 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding upstream 95568 17845101 ~ 17866128 (+)
LOC103025470 tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding upstream 154796 17684670 ~ 17806900 (+)
foxb1 foxb1 coding upstream 1063765 16895315 ~ 16897931 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding downstream 14653 17979428 ~ 17986224 (+)
atp8b4 atp8b4 coding downstream 176238 18141013 ~ 18177415 (+)
cops2 cops2,LOC107557994,LOC107589327 coding downstream 225236 18190011 ~ 18195649 (+)
cep152 NA coding downstream 231375 18196150 ~ 18211686 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 249334 18214109 ~ 18227746 (+)
G74413 NA non-coding upstream 484716 17476757 ~ 17476980 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding upstream 953157 16989028 ~ 17008539 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding upstream 997314 16957657 ~ 16964382 (+)
LOC111193101 NA non-coding upstream 1074548 16831109 ~ 16887148 (+)
G74294 NA non-coding upstream 1215301 16745859 ~ 16746395 (+)
G74471 scaper non-coding downstream 29819 17994594 ~ 17995133 (+)
G74477 NA non-coding downstream 150808 18115583 ~ 18182105 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding downstream 155834 18120609 ~ 18123835 (+)
G74479 NA non-coding downstream 212920 18177695 ~ 18179770 (+)
G74510 NA non-coding downstream 247137 18211912 ~ 18213361 (+)
G74169 NA other upstream 1673367 16286676 ~ 16288329 (+)
svip svip other upstream 2384163 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3040693 14891534 ~ 14921003 (+)
G73533 NA other upstream 3312145 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5063765 12871484 ~ 12897931 (+)
G74649 NA other downstream 490076 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 505929 18470704 ~ 18479345 (+)
G74832 NA other downstream 1118041 19082816 ~ 19085556 (+)
cadps2 NA other downstream 1175374 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1495183 19459958 ~ 19462187 (+)

Expression


Co-expression Network