G74477


Basic Information

Item Value
gene id G74477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18115583 ~ 18182105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100353
tccatagaaaaaaacattgggGTAACACTGAATGAAACGCAGGGTCTACCCTTCAGAGAGGTAGAATTGTACATGGTGATTCCTATAATAGCGGTCTGAGTTTGAAAGAAAGATTGAATTGGCTAGGGAGAAACACTGAATATGATGCATTTGCAGCGATTAGGCTAGTCCATGTGCTGGTGCTACAATTACCAGACATTTCATAAAGAGACCAAGCATTATTTCCACAGAAAGCAATCAAAAGCACATagagtattttacattttacctaTACTTGGCatataaaacaaactaacaatttaataaaaacattaaacccCCATTACCCATAAACATAAGAACAGCCTAAAGCAATCAGAAACCAAAAATGTCTTGATTCATCTGTCTTAACAGCCAATTACACATAAAAGGCAGGAAACGTCCTCCCCTCCCAACCAAATATGCTACGCATCTTACAGGTGACTGGATATGTTCACTTTTTTTAACCAGTCAAtcaaaagcatttaaaaaataaagcataaaagaGAAGccgtttaaaaataaaacttcaaaCCTAttgtaaaaatcaataaaaagtcAGCATGTCTATCAAACAAGCCTTCCAACTAAAAGGAATGCATGTTGAACTCAAGAGCGAAAGGAACGTTTTACAAACCTGACAGGAAAATACATATGTACAAATGTtatatatacatatatcattGCATTCACACATATAAGGTTTCAGTCGATTTGAACAACTCTTTGTGCATTTTTTGTCGTTAAGCATGAATATCACCAAATCGCAAAtatctgtatttaaataaacaaaaccacTAGACAATATGCCCAAGCCTTTAAAGCTTTGTACCTCACTGGGTTCCACAATGGCAACATTCTCTGCACCAACTTTTCTTTTCATGCGGGCGCCCATCGTAATGCCAGCACTTCCTCCACCAAGCACAACGATCTTGTAGTGTTCCTTGGAGGCCAGTCCGCTGCTGCTGTGGATGTAGGagttgagagaaaaaaacacccgGCTGCTTTTCCTAATAGGAGCCAGATGTGAAGTGAATGCTACAGCCATTGTCCTGCAGTTAATTCGAtctagaaaa
>TU100354
tccatagaaaaaaacattgggGTAACACTGAATGAAACGCAGGGTCTACCCTTCAGAGAGGTAGAATTGTACATGGTGATTCCTATAATAGCGGTCTGAGTTTGAAAGAAAGATTGAATTGGCTAGGGAGAAACACTGAATATGATGCATTTGCAGCGATTAGGCTAGTCCATGTGCTGGTGCTACAATTACCAGACATTTCATAAAGAGACCAAGCATTATTTCCACAGAAAGCAATCAAAAGCACATagagtattttacattttacctaTACTTGGCatataaaacaaactaacaatttaataaaaacattaaacccCCATTACCCATAAACATAAGAACAGCCTAAAGCAATCAGAAACCAAAAATGTCTTGATTCATCTGTCTTAACAGCCAATTACACATAAAAGGCAGGagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100353 False 1094 lncRNA 0.38 2 18115583 18132859
TU100354 True 1694 lncRNA 0.09 2 18115583 18182105

Neighbor

gene id symbol gene type direction distance location
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 129359 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 153922 17887308 ~ 17961661 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding upstream 239344 17868563 ~ 17876239 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding upstream 249455 17845101 ~ 17866128 (+)
LOC103025470 tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding upstream 308683 17684670 ~ 17806900 (+)
cops2 cops2,LOC107557994,LOC107589327 coding downstream 7906 18190011 ~ 18195649 (+)
cep152 NA coding downstream 14045 18196150 ~ 18211686 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 32004 18214109 ~ 18227746 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 244759 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 266203 18448308 ~ 18452812 (+)
G74471 scaper non-coding upstream 120450 17994594 ~ 17995133 (+)
G74461 NA non-coding upstream 150808 17961696 ~ 17964775 (+)
G74413 NA non-coding upstream 638603 17476757 ~ 17476980 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding upstream 1107044 16989028 ~ 17008539 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding upstream 1151201 16957657 ~ 16964382 (+)
G74510 NA non-coding downstream 29807 18211912 ~ 18213361 (+)
G74535 LOC108436883 non-coding downstream 189611 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 279339 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 351703 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 442966 18625071 ~ 18626410 (+)
G74169 NA other upstream 1827254 16286676 ~ 16288329 (+)
svip svip other upstream 2538050 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3194580 14891534 ~ 14921003 (+)
G73533 NA other upstream 3466032 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5217652 12871484 ~ 12897931 (+)
G74649 NA other downstream 272746 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 288599 18470704 ~ 18479345 (+)
G74832 NA other downstream 900711 19082816 ~ 19085556 (+)
cadps2 NA other downstream 958044 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1277853 19459958 ~ 19462187 (+)

Expression


Co-expression Network