G74479


Basic Information

Item Value
gene id G74479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18177695 ~ 18179770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100356
TCTTTTTAATCAGAAGAAATCACTTAGAAATTTGTACAAGCATACAAAATGATTACAGATAATAAGAAAAAATTGAGAGGTATATGTGTAGCTTTCCCTTTTTTAGATCTATTAGAATCCCTTTGATCACTGTCAGAACCCCTTCATATGGTTTAAAAATGATCCCTCGTGTTTTATTCTTCTGTAAAAATGGCCGCTCCTCCCCCTGGCCTTGTTACGAACAGGCTCTGCTGTACCAGAGCAGCTCTTCGAGCATCAGGCGTGTAGTACTGCTCCTTCACTGTCCGGAGAAAAGAATCCATCCTTTCAGTGGGTACCATGGAAACCGTGCAGCCTCCCCATCCAGCGCCTGTTAACCTAGAGCCCACGGCACCGGCCTGCCTGTGagagAGACAAATGTCCACCAGCTGGTCCAGCTCTGGGCAGCTACACTCATACAAGTCTCTGCAGCTAGTGTGGCTCTGGTTCATTAGATTGCCCAGCTGCAGGACAGCACCATCAGGAGATGAGTCACACACAGCCTTGAACTGCAGCACACGTGGGAGAATCTGAAGGTCTGGATTCATGAGGACAGGTTAAGCTTAATTCTATCATCTTTCTTCTGATATTCTTTAGCTGACACATGGCCTGCATATGAGATTATGACTATGAGGAATGACTGTGTGCTTCTATGTGCCATCACCATGCTGAGTGTTAGCACTGAGGATGTTTTTGCTGAGCTGCTCAGTGGTTATTCCTAGAATCTTGCAGATTTCCTCTCTGCTGTAGGGCTCAGGGTGCAGGACTTCCTCTACCAAATCCAGCATCTTTTCCAGACTCAAACCCAGCGCTGTCTGCAAATCCCCCAGCTTCTGAAGGCTGCTCCACTCCAGGCCTCTGGCCTTAGCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100356 True 891 lncRNA 0.47 3 18177695 18179770

Neighbor

gene id symbol gene type direction distance location
atp8b4 atp8b4 coding upstream 280 18141013 ~ 18177415 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 191471 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 216034 17887308 ~ 17961661 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding upstream 301456 17868563 ~ 17876239 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding upstream 311567 17845101 ~ 17866128 (+)
cops2 cops2,LOC107557994,LOC107589327 coding downstream 10241 18190011 ~ 18195649 (+)
cep152 NA coding downstream 16380 18196150 ~ 18211686 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 34339 18214109 ~ 18227746 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 247094 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 268538 18448308 ~ 18452812 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 53860 18120609 ~ 18123835 (+)
G74471 scaper non-coding upstream 182562 17994594 ~ 17995133 (+)
G74461 NA non-coding upstream 212920 17961696 ~ 17964775 (+)
G74413 NA non-coding upstream 700715 17476757 ~ 17476980 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding upstream 1169156 16989028 ~ 17008539 (+)
G74510 NA non-coding downstream 32142 18211912 ~ 18213361 (+)
G74535 LOC108436883 non-coding downstream 191946 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 281674 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 354038 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 445301 18625071 ~ 18626410 (+)
G74169 NA other upstream 1889366 16286676 ~ 16288329 (+)
svip svip other upstream 2600162 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3256692 14891534 ~ 14921003 (+)
G73533 NA other upstream 3528144 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5279764 12871484 ~ 12897931 (+)
G74649 NA other downstream 275081 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 290934 18470704 ~ 18479345 (+)
G74832 NA other downstream 903046 19082816 ~ 19085556 (+)
cadps2 NA other downstream 960379 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1280188 19459958 ~ 19462187 (+)

Expression


Co-expression Network