G74494 (ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331)


Basic Information

Item Value
gene id G74494
gene name ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18120609 ~ 18123835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100377
CATTTTTGTTGGCTGGCGAGAAGAAGTTGAAAACAGGAGAAAATATAGTTCCCAGCAATGTGGTGCGGGGCGGGCTGCTAGGAGTGTCTGTCTGCACTTCCAGCTTTCCATTAGGCTTCACCAGTTTACTCTCACATGCCATGGTGTCTGAGGAGGAaagagttagcagctcatactTTAAGAGACATTCTAACATTAACTAGTGATAGTTTCCTAAATTGTATGCAAATGATCATATAACacttggaaaaaatatataaaaatgcccAGTAAAAGCACTGTTTACATTGTAGTACTAAATCTTTGAGAGGTCATACTAATTTAGTACTGACACTTATTCAATACTTGATTAAAATATTGCTATATTGTATTCTAACACACCTCCATTGGCAGGACCTTTCCTACGAGTTCTAGGGTTAGTTCTGCTGGGCAGGTTCCCAGTGGGTGGGGTGGACGTGATCAAGTTACTGTCAGAGTCACAGTCGACACGGCTCCTCTTAGCAGGGGTACACTGCTCCACCTTGACAGCATTGCCCCTAATGAATCTCTTGATGGTGGAGAAGATGCCAGTATCACTTTTCTGCATCCTGGCTCCTCCTGAGGGCCTTGTGTGCTCCACCTCGGAGTGCTTCCTCTTAGCCTTGGTGGTCCGGGCTGGTTGGGTAGGACTCGGCTGCTGAGATGCTTTGCGCACTCTCAGCCTCATTGTCCCAAAAGTTACATGTAAGAACGCCAAGTGTTAACGCCGGTACAGTCCTGAGGTGGCCGCGGAGCCAGCCACAACGGCGGAGACCGCGGTAAACGTCTCTGTCCTTCACCCGTCCGTCCAGTATGAGTCACGAAGAGACAGATAGCTTTCCTACGGCTTCTCGGGACGCCATTTCCCGCCTCCTCACCGAGACGCTCTTGAAAGAACCCGGATGATAATGAATGCACCATGTTGCGCATGAGCAAAAGTTTGAGCTGAGCTTCAcctgcatttctctctctcactcacacttacacactcacacgctgTACAAACTACTCACTGTATACACACTGCGGAAAGAAAc

Function

symbol description
ctdspl2a Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2).

NR:

description
PREDICTED: CTD small phosphatase-like protein 2-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100377 True 1055 lncRNA 0.48 3 18120609 18123835

Neighbor

gene id symbol gene type direction distance location
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 134385 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 158948 17887308 ~ 17961661 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding upstream 244370 17868563 ~ 17876239 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding upstream 254481 17845101 ~ 17866128 (+)
LOC103025470 tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding upstream 313709 17684670 ~ 17806900 (+)
atp8b4 atp8b4 coding downstream 17178 18141013 ~ 18177415 (+)
cops2 cops2,LOC107557994,LOC107589327 coding downstream 66176 18190011 ~ 18195649 (+)
cep152 NA coding downstream 72315 18196150 ~ 18211686 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 90274 18214109 ~ 18227746 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 303029 18426864 ~ 18430628 (+)
G74471 scaper non-coding upstream 125476 17994594 ~ 17995133 (+)
G74461 NA non-coding upstream 155834 17961696 ~ 17964775 (+)
G74413 NA non-coding upstream 643629 17476757 ~ 17476980 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding upstream 1112070 16989028 ~ 17008539 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding upstream 1156227 16957657 ~ 16964382 (+)
G74479 NA non-coding downstream 53860 18177695 ~ 18179770 (+)
G74510 NA non-coding downstream 88077 18211912 ~ 18213361 (+)
G74535 LOC108436883 non-coding downstream 247881 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 337609 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 409973 18533808 ~ 18534130 (+)
G74169 NA other upstream 1832280 16286676 ~ 16288329 (+)
svip svip other upstream 2543076 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3199606 14891534 ~ 14921003 (+)
G73533 NA other upstream 3471058 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5222678 12871484 ~ 12897931 (+)
G74649 NA other downstream 331016 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 346869 18470704 ~ 18479345 (+)
G74832 NA other downstream 958981 19082816 ~ 19085556 (+)
cadps2 NA other downstream 1016314 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1336123 19459958 ~ 19462187 (+)

Expression


Co-expression Network