G74510


Basic Information

Item Value
gene id G74510
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18211912 ~ 18213361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100397
aaatgtaaaaaagtgatgTTGAAAAGCATTTACATCACAACTTTTTCAGTTAATGCTGCATCAAAAATTTTGAGGAGTTTTTACAGTGAttgtttggagagccatgtcgtccgctggtgttggtccactgtgttttatcaagtcctaAGTCAgcgcagtgttttcccagaaaatcttacagcatttcatgcttccctctgctaacaACCTTTATGAatttgcagatttcatttttcagcaggacttggcacactggcaacagtaccagttggtcttataaaatattcagattttctgagacactgacttttgggttttcattcagctgtaagccataattatcaacaaaacaaataaatgcttaaagtagataactctgtgtgtaatgcatctatataatatgagttttacatgaactgaattactggaattaaaaaaaaaaaaacttttaatgatattctaattttttgagatgcacatgTAAATTTTTGGTAAGCTATGACTCGTCAAAGTTACATTAGCAAGTTTATGTTCTGGTAGTATGACTAGACAAAGTGACTACAAATCTGTTATTATAACTTTAATGAATTTCCATATTTGATGTCTGATTTCTCTACTAATATAAACTAAATTACAGAGATCTGTAGTTTGAGTTTTTGCTGGTAAAGGCTGGTTTAGGACGTGTTTAGCTGGTGTCATTTTAGGATAAAACAGCTTGTcacagacgtgtgtgtgtgtccttcacCCCTGAACATGCAGTATAGAGTAATGTTCTCTGTTTAGCCTATTTCAGCAGTATGGCTACACAAACAGTATTGATCATGTTTCAGATCTCACAGATAATGTCCTACTAGTCCAGTCCAGTTTAGTGAAAGGCTTAAAGAACTTTGGTATGCTCTGTCGTCATCAACTATGTGGGCTGTGTCTCCCTATGCTTTACACTGcttggttttaatcagtttggCAAATTGCCTTGTCGGATGTGCTGAATTTTGCCCAACTCTTTCCAAGTCCACTTGCATCATGCGGTAGAATAAGTTTAACAGAACAGCCTTgaattccttttatttttgttaaaaataaggTTAAATCTACAACTATATCAAATACAAGTGTTACAAATAAAACCTGTTGCACCCATACTGTTACATGATGCATGTGTGCACATGAAGGGGAGATGGAATTCAGCACagcactcttttttttcttttattttttaattgatgttgATGGCTTGCTTTACCCTCCTGTATTTGTTCTAAAAATCTGAATCTTCAAgtaaagtgttttcacactgtaaacatgTCAAACTGGTTGGTTTAGACCGTGAGCAAAATGTAAATCTGAAGGTTCATACCAGTTGATGTAAAAATACCCTCTCGGATgtttaactattattatttttgtattatttatacagtactgtactagTCAAAAGTGTGTACCCAtc

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100397 True 1450 lncRNA 0.35 1 18211912 18213361

Neighbor

gene id symbol gene type direction distance location
cep152 NA coding upstream 226 18196150 ~ 18211686 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 16263 18190011 ~ 18195649 (+)
atp8b4 atp8b4 coding upstream 34497 18141013 ~ 18177415 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 225688 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 250251 17887308 ~ 17961661 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 748 18214109 ~ 18227746 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 213503 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 234947 18448308 ~ 18452812 (+)
LOC103026409 LOC108436903 coding downstream 243232 18456593 ~ 18459147 (+)
LOC103030240 LOC103030240,LOC108436888 coding downstream 271093 18484454 ~ 18496455 (+)
G74477 NA non-coding upstream 29807 18115583 ~ 18182105 (+)
G74479 NA non-coding upstream 32142 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 88077 18120609 ~ 18123835 (+)
G74471 scaper non-coding upstream 216779 17994594 ~ 17995133 (+)
G74461 NA non-coding upstream 247137 17961696 ~ 17964775 (+)
G74535 LOC108436883 non-coding downstream 158355 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 248083 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 320447 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 411710 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 414288 18627649 ~ 18628028 (+)
G74169 NA other upstream 1923583 16286676 ~ 16288329 (+)
svip svip other upstream 2634379 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3290909 14891534 ~ 14921003 (+)
G73533 NA other upstream 3562361 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5313981 12871484 ~ 12897931 (+)
G74649 NA other downstream 241490 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 257343 18470704 ~ 18479345 (+)
G74832 NA other downstream 869455 19082816 ~ 19085556 (+)
cadps2 NA other downstream 926788 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1246597 19459958 ~ 19462187 (+)

Expression


Co-expression Network