G74535 (LOC108436883)


Basic Information

Item Value
gene id G74535
gene name LOC108436883
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18371716 ~ 18375539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100428
CCGTGTACATGGCTGAAGAGCCAACTGTGTCCTGTCTTTTGGACGGGACATCTTCCTGGCTGTGGGGAGGCTGAGTCTGTCCCTGCTTCTTACTTCGTCCGCCTGAGCCATcttcaGAGTCCAGCAGGAAGCAGGTGAGCAGGTGAGGGCACACTTCCTCCAGCACAGAGCAGAAGGAGCAGAATGCACCCGGGCCCTTCTGTGCCAGCCGGTCCAGAAAAAGCTCTGCCCTCTTCTTGCTGCTCTCCTGACCCAGGATCTCCTTATATTCCCCCAGAGAGAAGACCTTGTCGTACACCAGGTACGGCAGCACCTTGTTCACGTCCAGCTCGTTCAGCATCATCTCTCTGTGCTGCTTCAGAACCGTGGCGACCCATTTCCCCTTCTTCCTGCTTACTCCCTTCCTGGCTCCGTTCTTCTGCTTCTTGTTCTTCCTGACAAACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108436883, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100428 True 444 lncRNA 0.56 2 18371716 18375539

Neighbor

gene id symbol gene type direction distance location
LOC103027907 slc27a2,LOC108414297 coding upstream 143970 18214109 ~ 18227746 (+)
cep152 NA coding upstream 160030 18196150 ~ 18211686 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 176067 18190011 ~ 18195649 (+)
atp8b4 atp8b4 coding upstream 194301 18141013 ~ 18177415 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 385492 17979428 ~ 17986224 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 51325 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 72769 18448308 ~ 18452812 (+)
LOC103026409 LOC108436903 coding downstream 81054 18456593 ~ 18459147 (+)
LOC103030240 LOC103030240,LOC108436888 coding downstream 108915 18484454 ~ 18496455 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding downstream 131067 18506606 ~ 18513315 (+)
G74510 NA non-coding upstream 158355 18211912 ~ 18213361 (+)
G74477 NA non-coding upstream 189611 18115583 ~ 18182105 (+)
G74479 NA non-coding upstream 191946 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 247881 18120609 ~ 18123835 (+)
G74471 scaper non-coding upstream 376583 17994594 ~ 17995133 (+)
G74654 NA non-coding downstream 85905 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 158269 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 249532 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 252110 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 327182 18702721 ~ 18703887 (+)
G74169 NA other upstream 2083387 16286676 ~ 16288329 (+)
svip svip other upstream 2794183 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3450713 14891534 ~ 14921003 (+)
G73533 NA other upstream 3722165 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5473785 12871484 ~ 12897931 (+)
G74649 NA other downstream 79312 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 95165 18470704 ~ 18479345 (+)
G74832 NA other downstream 707277 19082816 ~ 19085556 (+)
cadps2 NA other downstream 764610 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1084419 19459958 ~ 19462187 (+)

Expression


Co-expression Network