nrg4


Basic Information

Item Value
gene id nrg4
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17877026 ~ 17885395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100463
TCTTTTCATCATTTCAAGTCACTTCAACCAGACAGAGTAGCTCACCTGACTCGGCAAAGGGAACAAACTGGGAACGTCTTTGCTCTGGTGGAAGCAGATATTCTAGTGACAAGGGGTTCCTGAGCAGTTCTCATGATGGCAGATCACGGTGACCCTTGCACTGGGTCAGAGGAGTTCTACTGCATGAATGGAGGAAAGTGCTTTAAAATTCCTTCGGTGTCCACACCtacctgtgtGTGTGGAGACAACTTTAAAGGTAGCCGATGtgagcagttccagctgctgtCCATTTCACCCAACAGTGAGGAGAAAGGCATGATTGCTGCTGTGATCATCATACTTATTCTCATCATGATAATGCTGGCTGTTGTTATCTACTACATCTGCAAGATTAAAAAGAGGTCAgctgaaaacaaaagaaagcagCAAAAGAACAATAAAGGATATTGGAATGTGCAATCAAAGGCTACACTGACAGAACCATGAACAGCATTaggaaaataaactgaaatagtATGATTGAGCTTCATACTTAAAGAATGTGAGTTTCCAAAAAGCACCCTCTGGTGGAGGCATTGTATAATGCACAATGACTCTGACTCCAATCTTTCTGATTTATCTTTCTTAAGATTTCAAAGAAAAGTTGTAAATAGTTATTTTtcagtttacagtttttaaacaaatcTAAAATGTTTAAGTTAGATATAAAATAGAATAAGTGATGAGACGTAGGGACAGAGTTATTATATTCTATGAAAAAAGGATAGCTTACATTTCAAAGTTACGTCTTGTTCTTTTTGATCTACTGCcagcaaatatttaaaaaaagtatcagTGACTGTTGTGTCTTTGAGACGTTTTCTTCTAAGGACTCTTTCATGCAGGACATATTTGTGCAGGTGTGgctgcacagtagaacaatGCACCTATTCTTTAGAGTCTGCATAATCTCCCCTAATCTTTCACAATCAAACAAGGTTTTGATTAATCTTTCTATCAACCTTActaacattacttttaaaagtttttttggtctcCAAAACCTCAGCTTGGACTTCCACCATTTCTATTAACCGACATTACAATGGCCTCTTGAAATATTTACtcttatttttaccttttagtGATTTGTGGTCATTATTTATAGTAATAGTTAATAGTTTTAGACAACAGTTTAAAGGAGACCATGGCTGCTGATCGCTAGGATGAGGTTTGCGGAGTCAAGGCATCATCTGGCCTTTTCTAATGATGACTGCAAACAAGCCATTGCCCacacaaactaaaaaatatcTCAGACCCTGGAAAAGTGAGAGTTCAAATCTAGCTTGGTGCACAAACATTtgcaaagtgctcctatatttatttttctatcctATTCTCACCAGaagcacaagaaaaaaaaaaagaatctagATTTTCCTTGAGCCTAAATTATCACGCACATACTTAACCCTAGAACCCAAGTCTACACGTGTTTAATCCTACATACCggtatacaatacaatatttgtCTCACAATTTGTGCATGATGTTGTTTAGACGGTTGTATTACGGATGTATTATTAACAGCTTTGTTTAAGACAACAAATGGTATGTGACTAATATAGGTATCGTCAGATACTCAATGTTGCAAAAATGGTAAAGTGCCAACATTCCACTAATCCTAATTCAATTTGTCGCTCAACAATATAATGGAAACATATCTGTACATTTTGAACTCACCAAAACACATAAACATGACGCTATTGTACCACTAAGAAAACACCCTGCGAATACAACACTCtgtaattaactatatattgtatatttgttttaatctttaatgaagaaaaaaaagttaaacagtgttcatttacatTGCATGTGTGTTCATTGTTAAAGTAGTGTCAATGTgatcaaatgtattttatctGTTGGACAATGTGTATGTGGggatgtgtatatgttcagttccagcagcagctcacctgatttacaaaatttaccaaaccaggtgttgatatgataaaaactatgaataactctattaaactattaataatattattaatattaaagctctgctttttgtaaaattgctgtttgtatttattctaatcCTAGTgctttactgagctaataaacacttacttcacaag
>XM_007246510.3
acaatgcatttttgTCAGAATTGCACACAAACCTCCTTAAAATGCAACCAGCTCAACTGCATTGTATTCCACTGTGTTGCGCTGCGAATgttcaaaagcaaatcacaatgcacaggatAGCATTTCTTTCAAGGGGCTCGAATAGCTTCCACACCGAGCATGGCAGCAGCAAACCCCAGACAACTGACTGGAGATTGTTCTCTGGACTTATCGCTCCTGGGCTCAAAAGTAGTGTTTACACTGAACCAGAAAAATGAAgtgattacatttaattttggcATGAATTGCGCGCTGCTCTTAGACAAAATGAAATCTTGTGCATTGTGATTTTTGGTTTTGAACATTTGCAGCGCCACACAGTTGAATAAAATACCATTGAGCTGATTGCATTTTTAGGGAGGTTTGTGTGCAATTCTGACACAAATTCATGGattgtttttgaaaatgtaaatccttgtgtattgttttttaataaagagattAGAGATGTaatagtggttttgcattttattttggcACTTTTTCTGCATGTTAGTGTGGAAAAGCAAAGCATCTTGTGGATTGCATTTGCATTTTTCCATGGTAGTGattgcttttcaatttggccCTAATTCCTCTCCATATTACAGCATTAGGAGAAATGGAAAAGGTAATACACTGAATTTACTTATTCCATTATATTTCACAAATACTCTCTCTTTTAGTGGAGTTTTATAACTTAAATTTGGGAGTTTGATCCACGCCtttactcctcccactctccaaccaatataaaccgtcacttcctctctacctgcgtgtccaacaaacttgcacccacctcctccccatcttcctcctcaaTTTATTTTCTCCCCTTCTCTTCCCGTATCTCTTTGTGTgggggggcttcagcttcacgctTTTCCAGCAAAGCTGCTCCGAACTCCTGCCCAATCATCTGAGTTCGCCCCccttctcttttccttctctttcagtcaagggcgtggggaAATACTAGCAAATTATGTGCTAACATTTCTACATAAAACTGTGAAAAGTATCATcatcttcacaaaaaaacaaaggattGCCATATCCTCAGTATATTGTACtacactaatgctaatacacatttacacacctcaAACCTCAGGATTTTTTGGCTCTTCCTAACGGTTTCATGTAAAAAACACCCTTGTCCCTGGTGTGCCCTGTAAGCAGGAATGTAAACACGACGCTGAGAGTTCACAAAGTTCCCACAATTCCACACATACCTGTGTGTAGTTCAGTGGATTTCCTCTTAAACATAGCAGACATAGTTGAGTTTGTGTCGTCAGCCCATACAGAGCCTGAGAGCAACCTCGGTAAGAGCAGGCCATTACTCACATTACTCATCCACACCACAATTCACACtgtaaaatcagtttaaaacacAACATTCAGAAAAGAAGAATGTAATGAAGAATGTTAAGGGAATATAATGAGACGGCGTGATCCCTCtcatttacattttcacaatGTTTTACCTGTGGTAGTCAGCAGGCCAATTGTACCATTTGCAATGTGGACAAACAGCAACCACCGCATTTCTGGCATGCCTGTGTCACTATTTGTGGCACAAGAACTTTCTTTTCATCATTTCAAGTCACTTCAACCAGACAGAGTAGCTCACCTGACTCGGCAAAGGGAACAAACTGGGAACGTCTTTGCTCTGGTGGAAGCAGATATTCTAGTGACAAGGGGTTCCTGAGCAGTTCTCATGATGGCAGATCACGGTGACCCTTGCACTGGGTCAGAGGAGTTCTACTGCATGAATGGAGGAAAGTGCTTTAAAATTCCTTCGGTGTCCACACCtacctgtgtGTGTGGAGACAACTTTAAAGGTAGCCGATGtgagcagttccagctgctgtCCATTTCACCCAACAGTGAGGAGAAAGGCATGATTGCTGCTGTGATCATCATACTTATTCTCATCATGATAATGCTGGCTGTTGTTATCTACTACATCTGCAAGATTAAAAAGAGGTCAgctgaaaacaaaagaaagcagCAAAAGAACAATAAAGGATATTGGAATGTGCAATCAAAGGCTACACTGACAGAACCATGAACAGCATTaggaaaataaactgaaatagtATGATTGAGCTTCATACTTAAAGAATGTGAGTTTCCAAAAAGCACCCTCTGGTGGAGGCATTGTATAATGCACAATGACTCTGACTCCAATCTTTCTGATTTATCTTTCTTAAGATTTCAAAGAAAAGTTGTAAATAGTTATTTTtcagtttacagtttttaaacaaatcTAAAATGTTTAAGTTAGATATAAAATAGAATAAGTGATGAGACGTAGGGACAGAGTTATTATATTCTATGAAAAAAGGATAGCTTACATTTCAAAGTTACGTCTTGTTCTTTTTGATCTACTGCcagcaaatatttaaaaaaagtatcagTGACTGTTGTGTCTTTGAGACGTTTTCTTCTAAGGACTCTTTCATGCAGGACATATTTGTGCAGGTGTGgctgcacagtagaacaatGCACCTATTCTTTAGAGTCTGCATAATCTCCCCTAATCTTTCACAATCAAACAAGGTTTTGATTAATCTTTCTATCAACCTTActaacattacttttaaaagtttttttggtctcCAAAACCTCAGCTTGGACTTCCACCATTTCTATTAACCGACATTACAATGGCCTCTTGAAATATTTACtcttatttttaccttttagtGATTTGTGGTCATTATTTATAGTAATAGTTAATAGTTTTAGACAACAGTTTAAAGGAGACCATGGCTGCTGATCGCTAGGATGAGGTTTGCGGAGTCAAGGCATCATCTGGCCTTTTCTAATGATGACTGCAAACAAGCCATTGCCCacacaaactaaaaaatatcTCAGACCCTGGAAAAGTGAGAGTTCAAATCTAGCTTGGTGCACAAACATTtgcaaagtgctcctatatttatttttctatcctATTCTCACCAGaagcacaagaaaaaaaaaaagaatctagATTTTCCTTGAGCCTAAATTATCACGCACATACTTAACCCTAGAACCCAAGTCTACACGTGTTTAATCCTACATACCggtatacaatacaatatttgtCTCACAATTTGTGCATGATGTTGTTTAGACGGTTGTATTACGGATGTATTATTAACAGCTTTGTTTAAGACAACAAATGGTATGTGACTAATATAGGTATCGTCAGATACTCAATGTTGCAAAAATGGTAAAGTGCCAACATTCCACTAATCCTAATTCAATTTGTCGCTCAACAATATAATGGAAACATATCTGTACATTTTGAACTCACCAAAACACATAAACATGACGCTATTGTACCACTAAGAAAACACCCTGCGAATACAACACTCtgtaattaactatatattgtatatttgttttaatctttaatgaagaaaaaaaagttaaacagtgttcattta

Function

GO: NA

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

RNA

RNA id representative length rna type GC content exon number start site end site
TU100463 False 2138 TUCP 0.35 6 17877026 17883786
XM_007246510.3 True 3464 mRNA 0.38 5 17878730 17885395

Neighbor

gene id symbol gene type direction distance location
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding downstream 276553 17588028 ~ 17600473 (-)
LOC103045127 rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220 coding downstream 451565 16992911 ~ 17425461 (-)
ice2 NA coding downstream 888536 16966782 ~ 16988490 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding downstream 911466 16958574 ~ 16965560 (-)
bnip2 bnip2,LOC107703138 coding downstream 1047045 16814916 ~ 16829981 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 76300 17961695 ~ 17975485 (-)
scaper scaper,LOC107712524,LOC107662441 coding upstream 105092 17990487 ~ 18110831 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding upstream 231050 18116445 ~ 18123698 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding upstream 240392 18125787 ~ 18141692 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding upstream 292287 18177682 ~ 18188399 (-)
G74556 tpm1,LOC108441842 non-coding downstream 10888 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 63061 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 621737 17254917 ~ 17255289 (-)
G74368 NA non-coding downstream 1075975 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 1090987 16770442 ~ 16786039 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 332894 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 465236 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 716582 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 727981 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 743666 18629061 ~ 18629405 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1406703 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2096348 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2462413 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 2662742 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 3079743 14709058 ~ 14797283 (-)
G74591 isl2,LOC105022634 other upstream 97352 17982747 ~ 18029747 (-)
G74791 NA other upstream 1053779 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 1107273 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 1185543 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1974299 19859694 ~ 19865982 (-)

Expression


Co-expression Network