G74654


Basic Information

Item Value
gene id G74654
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18461444 ~ 18462636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100578
ACAGAACGACAACAGGTCCATAATCATGAACACAAtgcatacttttaaaattaaaataaaagaaaatgtaattgaGAATGATTTTATATGTACTTAAGTATTTGATATATTTACGAAATAACATTGTTAAAAAGTTTTGTTATTCTTCACAGCATGTCATTAACTGAACTCAGCATGCCTGACATTTGTCCCACCATTCTAGTTTTAggatgttattatttttttTTATTTCATTGCATTTAAGTACTATGGCTccataaaacataacattaataaaacataatttgcATCAATACATCTGGACTTGCTAGTTACTTACTAAACTGGCCAAAAAGGTCTGCTCCAGAGTCATAAAAGTTCCTGACCACAAACAGTGCAAATCGCTACACTTGCACAATGTTTTCATgagatatttaaagaaaattatGGATTCTTACAGCTCCAACATAAGGGCTCCATTCAAAATAAACAAGTTCTAGATGATTGTCCACCCTATAAACAGTAAAGTGATAGCGGTGACCCATTTACATTATCCTAAGATTCAATAGAATAAGCAGCAATTGGTTTTGACAATGTCTAAGACCAAAACCAAGTACATTATTGTCACTAAAAAGGCAGACAGGGCAACAGTTTATCCCTCATAGTTTGGTTGTACAGTTACAATAAATGATCCCACAGTTCTACACAAGTAGAAAAcactagaaaaaacaaacatctgACTTTTCATGCGCTACATGTCACAGTGTTACTAAGCCCACAGCATAAGCAGCTAGGCTTTCATTCCTACATTGATAAAAGTTGTCAGAAAGAATTAGATgttacatcatttaaaaacaaatgcatAAATTGCCCAGTATTAAAAGCTACTGTCTATCAATAATGAAATGACTGGTGCCTGCAGTGTAACTAGTACACACCAGAGGATGGAATAAAATGTTCAGAGATTCCTGAGAACTGTCTTTTGTTGGTGTTTGAACCACAGGAAAAAGGCACTTTGGAAAGGAGGCAATTGTGATGCAAGTAGTTTGGATCACCGGAACATTCTATGCCAAAATGACTGGAAACTAGTAGAGTTGAAGGCACCAATGAATATGAGAAGCAGAAGATAAAGACCCATCATAATGGCAAAATGGTGTCTGACCAGCCATGACGTTCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100578 True 1158 lncRNA 0.35 2 18461444 18462636

Neighbor

gene id symbol gene type direction distance location
LOC103026409 LOC108436903 coding upstream 2297 18456593 ~ 18459147 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding upstream 8632 18448308 ~ 18452812 (+)
LOC103028223 duoxa2,LOC103028223 coding upstream 30816 18426864 ~ 18430628 (+)
LOC103027907 slc27a2,LOC108414297 coding upstream 233698 18214109 ~ 18227746 (+)
cep152 NA coding upstream 249758 18196150 ~ 18211686 (+)
LOC103030240 LOC103030240,LOC108436888 coding downstream 21818 18484454 ~ 18496455 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding downstream 43970 18506606 ~ 18513315 (+)
LOC103030871 NA coding downstream 52111 18514747 ~ 18524175 (+)
LOC103026700 lamb4 coding downstream 73238 18535874 ~ 18575367 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 115153 18577789 ~ 18615121 (+)
G74535 LOC108436883 non-coding upstream 85905 18371716 ~ 18375539 (+)
G74510 NA non-coding upstream 248083 18211912 ~ 18213361 (+)
G74477 NA non-coding upstream 279339 18115583 ~ 18182105 (+)
G74479 NA non-coding upstream 281674 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 337609 18120609 ~ 18123835 (+)
G74668 NA non-coding downstream 71172 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 162435 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 165013 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 240085 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 495002 18957638 ~ 18970866 (+)
G74649 NA other upstream 6247 18454851 ~ 18455197 (+)
G74169 NA other upstream 2173115 16286676 ~ 16288329 (+)
svip svip other upstream 2883911 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3540441 14891534 ~ 14921003 (+)
G73533 NA other upstream 3811893 14648829 ~ 14649551 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 8068 18470704 ~ 18479345 (+)
G74832 NA other downstream 620180 19082816 ~ 19085556 (+)
cadps2 NA other downstream 677513 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 997322 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 1064576 19527212 ~ 19537617 (+)

Expression


Co-expression Network