G74951 (fnbp4,LOC107598873,LOC107681673)


Basic Information

Item Value
gene id G74951
gene name fnbp4,LOC107598873,LOC107681673
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19477998 ~ 19481987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU100986
TTAAATTCTTCTGTTCCAGGAGCAGGTGGCTCTGCATCCTCATCTTCCATCTCTACTTCCTCAATCTCCCCATCGTCACTAAGGGGTGGTGGAGGGGGTGGTGGAGGCGATtctggtggtggagGCAAAATATCAGCATTTCCCTGGACAGCTGTAGAGGGCTGAAGAGGCTTGGCGTCTACTCCTCCTTCCTCTACCACATCTGGAAATTCCCACTGAGAGGCACTGCTCCGGTCATTCACGTAGAAGTACCGCCTGTGATCTCTGTCCCAGTGGCAGGACCAGCCCTTGGGAGTGGCGTTAAGTTCGTAATGTTTTATGTGTTCAGCAGCTTCCTGCAACCTGCGACGAAGATAATTTCCGTTCAAAGCACCCTCTCGCCAATCTGCTATCCGTGTCTCCGTTTGTAGTAAAAGCAACTGAAAGTTAGAGATGGCCTTTTTGTCAATTCCCAAGAACTCCATTTTGCTGGTTAATGTGTTTGCAAGCTCTCCAATCTGAAACTTGAGGTCCGGTGTTTCCTCCTCTTGGGTTTTGGGTAAACTCTTgtccttttcctctttttctttgtccCCCTGCTTCTCAGCAGTTTTGGAATGTGcGATATCTACATTATCTGGTGTGTCCCATCCTGCCTTGTCAGAGCCTCTGCTGTTCGAGTCAGGACTCTGAGCACGAAGAAAAGCAGTTTTCCACTTCGTCTTCTTCAAAAGGCCACTACGGGAGCCCTCCTGACTGGCCTCAGAACAGGGGCTGGAACCACCAGCACTAACATCACCTTCCTCTAGGGCGCGAAGTTCAGCCttttctctctaatgCAAGTTCCAGTTCCATGGTATCCTCCTCTGGCTCGTCTTCGCCTTCAGAGTTCTCAACTGAGTGGTTTCTGCTTTGCTGGTTAGCATTAGAAGGGCTTTCTGCATCACAAACAGCAGGAGAGCCTGAAGGCTGAGCATCTTCCCCTTCATTCTCCTGACCACTGTCAGTTTTCTCCTCTATAGCCAGAATCTTCTTCCTCCATTGCTCCTCCGCCTCCTTCACCTCAGGTGGTATGAGGGGTGCAAGGAGAGAGGCAGCCACCCCTTTTCGCTCTTCCTCATCACTGGTTAAAGCCACCACACTCTCTATTACTTCCTGTATAATGAattgaaaaatacaaaagtaaagCAAACT
>TU100987
ccGATATCTACATTATCTGGTGTGTCCCATCCTGCCTTGTCAGAGCCTCTGCTGTTCGAGTCAGGACTCTGAGCACGAAGAAAAGCAGTTTTCCACTTCGTCTTCTTCAAAAGGCCACTACGGGAGCCCTCCTGACTGGCCTCAGAACAGGGGCTGGAACCACCAGCACTAACATCACCTTCCTCTAGGGCGCGAAGTTCAGCCttttctctctaatgCAAGTTCCAGTTCCATGGTATCCTCCTCTGGCTCGTCTTCGCCTTCAGAGTTCTCAACTGAGTGGTTTCTGCTTTGCTGGTTAGCATTAGAAGGGCTTTCTGCATCACAAACAGCAGGAGAGCCTGAAGGCTGAGCATCTTCCCCTTCATTCTCCTGACCACTGTCAGTTTTCTCCTCTATAGCCAGAATCTTCTTCCTCCATTGCTCCTCCGCCTCCTTCACCTCAGGTGGTATGAGGGGTGCAAGGAGAGAGGCAGCCACCCCTTTTCGCTCTTCCTCATCACTGGTTAAAGCCACCACACTCTCTATTACTTCCTCTTTTTTGTTTCCCTTTTAGGTACAGCAGCAGACACTGCAGGAGTCTGTTCAGGATATCCCTCTGCATGGTGGGACATGCCGCTGCCATTGATTGATGAGGTTTCTGTGTACTGCTGCTGAAGACTCTGCATCTGATCTGCCAGATAGTGGGGAAGCTCCCAGGCAACTTCATTAGTCTGGGTGTTCCAATAGTAGTAGCAGCCCGTGTTCTCATCCCACACCTCCTGCCAATCTCCCATCTCAAGACCAGCTTAATTAGAAACAActCCTGCCAAGGAATACTGTGTATTATACTGAAATTCTTGTGCAGATCCATTCTGAACATGAGCTTGTTGCTCCGTTTTGGGTTCAGGGCGTGGAGGGGTAGGTGCAGGAGCACTGGGCACAGAATCTTCTGCCTGGGCTGGCTGAGTGGTGATTGCATCAATCTC

Function

symbol description
fnbp4 Orthologous to human FNBP4 (formin binding protein 4).

NR:

description
formin-binding protein 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100986 True 1173 lncRNA 0.49 7 19477998 19481088
TU100987 False 968 lncRNA 0.51 5 19480351 19481987

Neighbor

gene id symbol gene type direction distance location
slc15a5 slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796 coding upstream 18690 19454053 ~ 19459308 (+)
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding upstream 115077 19341280 ~ 19362921 (+)
fezf1 fezf1,fezf2,LOC102788291 coding upstream 143661 19330251 ~ 19334337 (+)
slc13a1 slc13a1 coding upstream 344118 19119547 ~ 19133880 (+)
iqub iqub coding upstream 363049 19098516 ~ 19114949 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding downstream 11935 19493922 ~ 19503421 (+)
LOC103044412 NA coding downstream 58474 19540461 ~ 19560568 (+)
amn1 amn1 coding downstream 81067 19563054 ~ 19569137 (+)
LOC103045341 NA coding downstream 92327 19574314 ~ 19590443 (+)
LOC103047790 pk,LOC108436941,LOC108275437,LOC107716749 coding downstream 178286 19660273 ~ 19688110 (+)
G74833 NA non-coding upstream 391767 19085803 ~ 19086231 (+)
G74831 NA non-coding upstream 395477 19082312 ~ 19082521 (+)
G74810 NA non-coding upstream 483135 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 507132 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 774111 18702721 ~ 18703887 (+)
G74958 kiaa1033 non-coding downstream 25131 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 45673 19527660 ~ 19527911 (+)
G74982 NA non-coding downstream 58933 19540920 ~ 19543821 (+)
G74992 NA non-coding downstream 111578 19593565 ~ 19595241 (+)
G74996 arid3b,LOC108436938,LOC108275332,LOC107696285 non-coding downstream 117800 19599787 ~ 19620245 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 15811 19459958 ~ 19462187 (+)
cadps2 NA other upstream 155223 19140149 ~ 19322775 (+)
G74832 NA other upstream 392442 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 998653 18470704 ~ 18479345 (+)
G74649 NA other upstream 1022801 18454851 ~ 18455197 (+)
LOC103044129 NA other downstream 45225 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 721632 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1541269 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1606635 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 1768480 21250467 ~ 21264776 (+)

Expression


Co-expression Network