CI01000009_03171440_03194494 (DCAF6)



Basic Information


Item Value
gene id CI01000009_03171440_03194494
gene name DCAF6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3171440 ~ 3195145 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000009_03171440_03194494.mRNA
ATTTTTAACTTCAAGAAGAGATAGATGTCTTTTATTACCTGGCTTTGGGCTAACGTTTCAGGTTCTGTTCCAGTGTTGCCTCATTTAAAGCAGACTCCCCACGTTCACTAATGACACAGTTCAGGCTGCTTTCAACACTTGTTATTTTAACATGCAATGCATCTTACTACATCTAACACAATCTAATTCCATCTCCCCACTACACAAAGCAGAGCTGTAGAGTGAAAAGCGGAAGAGCAGAATGAGGGATAAATGCTTAATCCCTCCCAATGATGTTATTTTCGAAAGGCAGCGGTCAAAGAAAATGGACCCTGTGTGATGAGGTTTGAGCTGCTCTAGAAAGGGGAGGAAAAGAGCGTATCAACCTTGAGTTAATGAAATATTGATCGCTTTCTCTTAAAGGCACAGTCAGGCAGCACGCACTACCTCAGTCCATTTCAGCACTAAAATGTTAAAGCAGGAATTTATGTGATGGCTAAAATATTGGTGTTATCAGTGGAGCTCAGGTAATGATGTAATCAAATTGAAATCTAGTGGAACACAAAAGAATAATTCTTCAAAATTGTGTTCCAAAGAAGAAATGATATGGGGGTTTTGTGTCAGTAATGACAAAGTGTTCATTCCTAGTGAACTATTTCTTTAAAGAAAATCATGGAGACTATGCTAAATAATGGCACAGTTTATGGAACAGAAGAAATAAGCTTTTCTTTTTTAGAGAAAGCAATGTTGGTGTTCATATCAGCTGGTTTTCGTGTTTCTTCAAAGGTAAACACCATATCCTGGAATGAAACAGGCGAATACATCTTATCAGGTTCCGATGACACTAACTTGGTTATCACAAACCCTTACAACAGAAAGGTCAAGACGACTATTCGTTCAGGACATCGGGCGAACATCTTCAGCGCAAAGTTCATGCCCCACACTAACGATCAACAGATTGTGTCCTGCTCAGGAGATGGCATCATTTTCTACACACACACAGAGAAGAGCCAAGAAATCAACAGACAGTGCCAGTTCACATGCCACTATGGCACTGCTTATGAGATAATGACAGTGCCAAATGACCCCTACACCTTCTTGTCCTGTGGAGAAGACGGTACAGTGAGGTGGTTTGACTTGCGGATGAAGACGAGCTGCACAAAGGAGGACTGTAAAGATCTGGTGAATAACACTGATGCAGTGCTGCACATCAGTTATATTTTTGAGGAAGCAGCCTCCACCCTCAATTTCTCAACCCACAGAGTGTGTGCTGACATTTTGATTAATTGCCGGAGAGCCGCTACCTCAATATCCATTTGCCCCCTGGTCCCCTACTATCTTGCTGTGGGCTGTTCAGATAGCTCCGTGAGGATCTACGACAGAAGAATGCTGGGAACAAGAGCTACGGGTAACTACATGGGCAGAGGGACGACCGGCATGTGTGTGCGTTTTGTCCCAGCCCACCTGTCCACCAAATCCTGCCGCGTCACCTCTCTGTGTTACAGTGAAGATGGACAAGAAGTGCTGGTCAGTTACTCCTCTGACTACATCTACCTGTTTGACCCCAAAGATGACCAGGCCAGGGAGCTCAAGGGCCCTTCTGAAGAGCGGCGAGAGGAGTTGAGGCAGCCGCCGGTAAAGCGCTTGCGTCTGAGAGGGGACTGGTCGGACACGGGACCGCGCGCTCGGCCTGAGAGCGAGAGGGAGCGTGATGGAGAGCAGAGTCCAAATGTATCACTCATGCAGAGGATGTCGGACATGTTGTCACGCTGGTTCGAAGAGGCCAGCGAGGCCCAGAGCAGCAGAGCACGTCCACAAACTCGACCCAGAGGTACAGCGGCTCGACCAGAAGGGACATTTGCGACCTCAGAGGCACAGACTCAGGCACAGGCGTCTGCTGAGGTGTCAGCTGAAGGAGCGATGGAGGTGGAGCCACCTGCCCCTGGCTCCTCCTCCACTGTGACAGTTCCTCCCCCAACTAGCTCATCCTCCATGGAGAGCGCTGCCTCCTCCTCTCTCCTCTCCTCCCCAGACACAGAGCAGAAGAGCCAGGATGAGGTTACGCCCACTCCCTCGGCCACACCCACTCCTTCAGCCACACCCACCCCATCTAGAGAGGCAGCTTTATCTGAATATGGTCCTCACCGGCTGCCGGGCAGACGCACAATGCCTTCTGTACCCGTTACTTCCAGACCAGAGAGCTCAGCCCGACAGGCTGCTGCTGCTTCTGATGCAGGCCCTTCCGCAGATTCTCCCTCATCTGTGGTAAACAAACAGCTCGGATCCATGACTCTGGATGAGGAGCAGGGAGGTGCAGAAGCGGCAGGACATGTAATCAGTGATCAGAGTACAGGTATCAGTGAAGCTTCCCTAGAGACTACAGAAACCGTGCCATCCACATCAGCGCCTTCACTTGGCACCAGCTCTGGTAACAGCAACGGGAGCGGCAGCACTCCTCCAGGGCCTGGGCGGACGAGCACGGCAGAACCGGTCCTTAGTCTGCACTACAGCACTGAAGGCACCACCACTAGCACCATCAAACTGGACTTCACAGATGAGTGGAGCAGTCCAGCGTCCAGTGCCAAGGGCAGCAGTGGAGGACATAAGCCTGGGGAGGTGGGTGAGAGCCAGACCAAAGAGGAGCCCACGGGACAAACCTCAGAGCAGAGGTCAAGCCCACCCTCAGAGAGTCAACCCACACCCGATGGGGTGCAAACTGCAGACAGTGGCAATGAAAAGCCCTCCATTAGCTCTCAAAACAGCATGCCACCGGCGGCACCACCAGAGGGCCTGTCTACTGAAGACTTGGCTCGTCCCAGCGCACCCTGTCCCTCAGAGGAGCTCCAGGCTGCTGGTTCGAGGGACTGCAGGAGGAGCGAGACCGCAGGGATGGGTGGGCAGGGTTCGACTCAACCCTCCCGTAGTAATCAGGACTCTGATGACAGTGACGACGACCCCATTCTTATCCCTTCAGCCAGGTATAGAGGAGGGCAGGGACAGAGACGGTCCGCTGCGGCCCGCATCCAGGAGCTGTTCCGCAGGAGAAAAGAAAGGCGTGAGATGGAGGAGAGTGAGACTCAGAACATCAGGAGACCCTCTGTCAAGATGACGTATAAGGGCCACCGCAACTCCAGGACCATGATTAAGGAGTCGTGTTTCTGGGGGAATAACTTTGTGTTGAGCGGCTCAGATTGTGGCCACATCTTCATCTGGGACAGACACACGGGAGAGCACCTGATGCTGCTGGAGGCCGATAACCATGTGGTCAACTGCCTGCAGCCTCACCCTTATGACCCCATTCTTGCTTCATCTGGAATTGACTATGACATTAAACTGTGGTCGCCTTTAGAACAGTCAGCATCATTTAACAGAGTCCTTGCTGATGAGGTGATTGCTCGTAATGAGTTAATGCTGGAAGAGACGAGGAACACTATCACTGTCCCTGCTTCCTTCATGCTCCGAATGCTGGCATCATTAAATCACATCAGAACAGACCGTGTGGAGGGTGACCGTTCAGAAGGCTCTGGACAAGAGAATGAGGATGAACAGTAG

Function


symbol description
dcaf6 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF6 (DDB1 and CUL4 associated factor 6).

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000009_03171440_03194494.mRNA True 3531 mRNA 0.51 21 3171440 3195145

Neighbor


gene id symbol gene type direction distance location
CI01000009_03140599_03143635 SLC35A5 coding downstream 27805 3140599 ~ 3143635 (-)
CI01000009_03009238_03025860 NA coding downstream 145503 3008360 ~ 3025937 (-)
CI01000009_03006152_03007243 NA coding downstream 163585 3005386 ~ 3007855 (-)
CI01000009_02975388_02982670 NA coding downstream 186049 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 253890 2915641 ~ 2917550 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 30623 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 39869 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 48453 3243598 ~ 3259106 (-)
CI01000009_03261739_03262843 NA coding upstream 65893 3261038 ~ 3262843 (-)
CI01000009_03264437_03267242 NA coding upstream 69292 3264437 ~ 3267242 (-)
G52494 NA non-coding downstream 15294 3150263 ~ 3156146 (-)
G52589 NA non-coding downstream 22008 3147928 ~ 3149432 (-)
G52518 NA non-coding downstream 89003 3081991 ~ 3082437 (-)
G52566 NA non-coding downstream 100052 3071161 ~ 3071388 (-)
G52557 NA non-coding downstream 121787 3049098 ~ 3049653 (-)
G52496 NA non-coding upstream 7620 3202765 ~ 3207426 (-)
G52521 NA non-coding upstream 25587 3220732 ~ 3221942 (-)
G52593 NA non-coding upstream 27487 3222632 ~ 3222961 (-)
G52592 NA non-coding upstream 28345 3223490 ~ 3223799 (-)
G52513 NA non-coding upstream 83599 3278744 ~ 3279333 (-)
CI01000009_02885473_02893975 NA other downstream 272033 2883688 ~ 2893975 (-)
G52410 NA other downstream 608907 2551724 ~ 2562533 (-)
G52098 NA other downstream 1763813 1401932 ~ 1407627 (-)
G52828 NA other upstream 1022275 4217420 ~ 4231469 (-)
G53515 NA other upstream 2307250 5502395 ~ 5505248 (-)
G55814 NA other upstream 5230676 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5663007 8856310 ~ 8860563 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location