G75026


Basic Information

Item Value
gene id G75026
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19761774 ~ 19765765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101106
tctgtatctattaaaagtcttttatTTTGAGAAATAACAGATGAAGCCAGTGAGCGATGATGAGTACTGTCTCCTACATCTTTAATAACTAGAGAAAACTGCTATAGAAAAAGACCAGTAGTAAAGAGAATTAGAGGTCTTACAGGTGTCTGGACCATACAGTACTGCTACTGGGCCACTATTTGAAATATGTGACgggtaaatgtatgaataaatgaatgattttgtatgtgtacatacatacatatataaaaataacatatagCTGTTGGGATTTGTGTAAACCTCACAGACACAAAGGGTATCCTGACAAAAGTTTATATTCAAATAATAATGGCACCATCTTTTGGCAGAGGAGATGTATGCagaactgaagaaaaacaagGGCAAGTAAGAACTAGTGTATTAATCCAAAAATACATTAGCCTATTTTACTTGTAGTGccaattaatgcaaaaaaaatattgtgattaatcaaaatattttgtaattCACCACAATTGTTCTTAAatataaagcatttttatactggatattaaaatacaaataaaataatggatGTACAATTGGccttattaaattataatttacagtctaaaaaaaaattaatcttgAGAatttgtagtgtgtagtgtagttgttttttttttactttattataatcttatgtgtgtgtgggaggaagTAACAGTCCATGTTTCAATATTTCATCTATCTGCCTTCTTAACTCTATAAAGCAGTAGCAAAACCGAGTTTACATCGCTTTATAAAACCACTCATAAAAATCACCTTCATCTTTGTAATCATGGTCACAATATTTCATTTCTCtttaaattacacattaaaGTTAATTGATTGATGCATTAACATGTTAGTGTTGACAGCACTACCTGATGTTGGGAATTGTACAGACTAAAATTCATGTCAAAGGTTTAAGGTGTTGAGGTCACAATTAtagatttgtttattaaaaaaacaaacaaaaaaaagacattaaaaatagCCCTCGTAAAATTCTTTATTCATAAACTTGATGCAAGTTTACAAATTTTTACTGTACATGGTCAAAATTCTCTTGCAACGGGAAAAAACAACCTGAAAGCATGCCAAGAGTATGTACGATAACTAGTCCACCATGAGATGGCACCAGAAAAGAACACCGTGAGCGGTCAATCTGAGGTCGGTCTTccaagaaacaaaaacaaaaaaagcagccACCACTGTCCAGTCATACATGGTAGCACAGAGAAGACAAATGTTACCAACAGCAGTCCAGTTTGACAACAAACCAGCTTCATTTACTGAGAGGTGAATGTGAACTATAAAACAAAGCAGGAAGGTctggcaaaaaacaaaaacagagtaGCATGGATGTGCAGAGATAACTGTACTCCGCTGTGCTGCTCTTCGAGAACATGACTCAAAGAAGTGCTGGAAAGGAATGACGAAATCCACTTTACAGCGCAAAACAACCAACATATGCTTGAACGCAATCCTGTACACAATGTTTAAACACTTCTATATGAAAACTTACATCTATGGTCATGGATTTGTGGATCTGCAAGCCAGTGTTTAGGTATGGCTTTCCCGTAATCGTGATTGGCTCAAAGTCTGGACACGACTCACAACCTTTGCAGTGATCTAGGAGGCACACACTCaatatttttgtgcaaaaaaagcCAAATGATCCATAAAGACTTCTTACATCCAGGGCTGCTTAAGACTGtatattattacacacatgTCCTCAACCATCAGACATGATGAACTTCATAGGAATGACAGAAGGCCATGATGAAGACCTCATTTCTGACATCTTCTTGCCCCTCATTAAATGAGCCTGTATTGGGatcagaaaaaaatcaagaagagagcagaaaaaaacattaaaaaaaaaacaaaaaaaaaaaaaacccagaattGCTATTGAAGAAAAATTCTGTACTGATGTATTCTTCATTAATGTGGGCTGACAGGTAACGAATGCATGGTCATGCACTGTAGCAATGCAATGGTTCTCTGTCCTGAGTTACCACTTTAAATTGTGAGATGCCCCCAAATAGACCCTCCTGCTTGCAGTCAGcactaaaaatacaataatttgatGGTGTGCAAAGAAACACTGATCCAACCAGTTGCAGCACACACAGCACGACAAGTTTTACGCACTGCAACATCTGTAACTGTTAGACTGTAATCAGTCTAACAGACTTCTTGGAAGCTTCTTGGAAgatattaaaaatttaaaaatagcagtACTAGAAAAGAAATATTCCTCCACAATGACGTCCATTTTTCTTTGCGTTTAATCTACCTAATGGATCCTGATTGCAATTAATTTActgaacaaaaaagaaaatactaataTGGAATCATTAATGTGCTGATAACTTAAGGTACAGTGGTGAATCTGTATCAGCAGTTATTGAATAAAGTACATAAATGTCCaccattaaaatgaataaaggaaaaataTCTTGACACCTTCAAAAACGTGAGTACATGATTCATAACCCCTGAATAAATACAGTTTCCCCCTCTCCATTTTGCACATCTTCAAAACATCCAATCGAAAAGCACGGTCTTAAGCCCTCGACTGAAAATTCAATGACTGGTTGGTACTGCGGCTCACCCCAAGGCCAAAAACGAACTTACTTCACATCAACGGCACAATAAGGATGACTTGCACTTCAAATCCATTTACAAGTGTACAAGCAGACCTCTGTCCAACAAAGGAACAATGACACATTCTTTATGACTCTTCTTTTGCCTGTTCCAATCATGGCCTGTGCTAGAAGCAGGTACAGGCTAAAAAGCAAGAAACAGGAAAAGTGAGTGGTTTTCATCCACAGTTAATATTTGCGAACTCAAACTAGACACTGCCAAACTCTCCCTTATCTTTACTTTAATCATTAGAACTGGGGCACGAGCATATAACTCTGGCAAATAATGAGTCTTTAACAATATCAGCAATATATGTACCAGTACATGTTAACACAGAATGCAGAAGATAAAGAAGAGATCAGTGCCAGCAGATACAACAAGTGTGGCACGTCTTCATATAGTCTCTTATTGCATCCATTGCCGCTGTATTTCAGAAAACCTCTGCCAAAAAGTCTGAAGTCACGGCTGAAAGAACCTCCATTAACGGCAGGAAAAAGAGGGGGCAAAATCCAGAAAGCTCCTTTCATCTCCATTCAGGTATTAATCCGTCAGAGCCATACCTGCCGCTCCGGACAGCGAAACCAGACCGAGCGTCCGGCGGTATCTGATAATCACTCTGTGCAAGACACCCATTAGTACCAAGGCTCTGCGTCTCTCTCACACATCGTTCTTTTCCCTGCAGCGAACTGGAGAAATTAAGAGatgagagcaggagagactgaTTACAAGAGAGACAGCAAGTAACagggaaagacagaaagagacagagaggggacAAGTGCACATTCTCGCGTGCCCTCATACACGCCCACATGCACACACTTCCACAGAGACCAGTAGGACCTCACACTCCAGGTGAAGAGAAGGGAAGGATTTTGAGGGgaataatattacaaaaataaaaaaaaagcaaatggtTGATCAGAAATCCCATTTTCCCAGTGTGCGTGAAGAACAGCCATCGTCTTAACCATCTTCCTTAGGTGGTGTGTACCAGCCTGCAAAGCAAAACAAGGATACAAAAATTAGTTAAAAAGGGTATATGACAAACTGAGCCTATAGAGGGTATGGATGTgacaacacacctgatccaaccaATGAACTCTTTACAggaggaaaacattaaacaagcaGGGCAGTGTTAAGAGCAAGACAGAGAACCACTGGCTTAGTGTAGTTCTTTGGTGTAAAATCAGGTACATAATAATGTCAGAAAGATCATTACTAATTTCAATAGATCACTGACAAGACCAACTGCTTTCAATTTTAGCTtttacagctgtggaaaaaattaagagaccagtttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101106 True 3971 lncRNA 0.37 2 19761774 19765765

Neighbor

gene id symbol gene type direction distance location
LOC103047790 pk,LOC108436941,LOC108275437,LOC107716749 coding upstream 73664 19660273 ~ 19688110 (+)
LOC103045341 NA coding upstream 171331 19574314 ~ 19590443 (+)
amn1 amn1 coding upstream 192637 19563054 ~ 19569137 (+)
LOC103044412 NA coding upstream 201206 19540461 ~ 19560568 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding upstream 258353 19493922 ~ 19503421 (+)
LOC103030754 NA coding downstream 6722 19772487 ~ 19786105 (+)
LOC111193059 NA coding downstream 77537 19843302 ~ 19844222 (+)
LOC103024220 pim3,LOC108436897,LOC108275436,LOC107598820,LOC107573827,LOC107716739,LOC107696273 coding downstream 88833 19854598 ~ 19858835 (+)
LOC103023471 LOC108436948,LOC108275266 coding downstream 93668 19859433 ~ 19872712 (+)
prr5l prr5l,LOC107573861 coding downstream 248470 20014235 ~ 20024227 (+)
G75017 NA non-coding upstream 28736 19732016 ~ 19733038 (+)
G74995 NA non-coding upstream 112390 19624659 ~ 19649384 (+)
G74996 arid3b,LOC108436938,LOC108275332,LOC107696285 non-coding upstream 141529 19599787 ~ 19620245 (+)
G74992 NA non-coding upstream 166533 19593565 ~ 19595241 (+)
G74982 NA non-coding upstream 217953 19540920 ~ 19543821 (+)
G75033 NA non-coding downstream 33620 19799385 ~ 19799649 (+)
G75034 NA non-coding downstream 39001 19804766 ~ 19804976 (+)
G75131 NA non-coding downstream 294605 20060370 ~ 20122740 (+)
LOC111193104 NA non-coding downstream 518912 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 686422 20452187 ~ 20452452 (+)
LOC103044129 NA other upstream 224157 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 299587 19459958 ~ 19462187 (+)
cadps2 NA other upstream 438999 19140149 ~ 19322775 (+)
G74832 NA other upstream 676218 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 1282429 18470704 ~ 18479345 (+)
LOC103028745 NA other downstream 437854 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1257491 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1322857 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 1484702 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2989208 22754973 ~ 22780959 (+)

Expression


Co-expression Network