G75069


Basic Information

Item Value
gene id G75069
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19640821 ~ 19688118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101154
TCAGGTGATATCAGGTGATCATCCGTTTAATAGATGGAAATCCAGCCTCAGAGCACTTCCATACAGCAGATATACATCTTATCAGTCTCAGAATGCCAGTCGACAGTGGGTAGAATGAACAGCGAGAGTGCTTGAATAACAGAGAGAGGTTTGGAGGGCATCCTGTGCTTTCTGAAGTCCCAAAATCCCtcaccacaccccacacacaatACAGGACTTTGTGTTGATCTACAGCCAACTGCCTCCCACAGAGCAACAGTTGGCACCCTGAGCTTTATCATGACCCTTTTCATCATGGAATTTCCTATCAGCCACTTAGCTTACACACAGCTTATCAACAAAGCATGAGATACCAACCAAAACTCAGCATGgaagacaacagtcaaccggAGTACAGACAAAGTGTTGTGAGGGGTCTGGATGTGAAAGGATGAAACACCAGGTTGCTGGGGATTAGTGTAGAGTGGTGTAGAGAACTGTCACAGTGAACGGCACTGTTGTGACGGCCTGCTAAAAACTTCTGGATGAAGGGAGATTTGGTAGCTTTGCTGTTGCTTAAATATAGCTATAGGATGATGAGGAAAGCAGTATCTAAATGGAAAAAGGAGGAAGGAGGAGGGGAATGGGTGCTTGGGAGAGAGGTACAGTTCTTAACGGAGCTCAAGGCACCAGAACCACGCGCATGGTGTTGGTGTATCCGGAGCCAGGGCGCCAGCCAGTGACAACAATCACCACGAATCCccag

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU101154 True 745 lncRNA 0.48 2 19640821 19688118

Neighbor

gene id symbol gene type direction distance location
LOC103046970 NA coding downstream 3169 19635125 ~ 19637652 (-)
LOC103046663 cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975 coding downstream 8382 19624687 ~ 19632439 (-)
LOC103045635 arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332 coding downstream 18273 19596930 ~ 19622548 (-)
etfbkmt etfbkmt coding downstream 68285 19569330 ~ 19572536 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292 coding downstream 115072 19505050 ~ 19525749 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding upstream 4066 19692184 ~ 19725549 (-)
LOC103021510 LOC108436943 coding upstream 42045 19730163 ~ 19749501 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding upstream 74677 19762795 ~ 19772325 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding upstream 251517 19939635 ~ 19972658 (-)
ticrr NA coding upstream 349337 20037455 ~ 20051285 (-)
G74928 NA non-coding downstream 222017 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 285770 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 290810 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 298885 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 350534 19287340 ~ 19290287 (-)
G75081 NA non-coding upstream 57446 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 111267 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 116648 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 183024 19871142 ~ 19872681 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding upstream 344492 20032610 ~ 20034759 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 567933 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 632455 18992668 ~ 19008366 (-)
G74791 NA other downstream 700357 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1611074 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1755426 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 171576 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 339044 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 396310 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 934523 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1377201 21065319 ~ 21071246 (-)

Expression


Co-expression Network