G75208 (api5,LOC107753602,LOC107661449)


Basic Information

Item Value
gene id G75208
gene name api5,LOC107753602,LOC107661449
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20032610 ~ 20034759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101362
aacACTTAAATAATTTCTCAAACTTCTGTAAAATATGCATGCAAAAGATGGTCCAAAATCAAACAAGAACTTGAAAACTGATGtaaaaatttcaaaaaaatgTAGTCACTGAAACTTCTGTGATGGATGCAAGTTAAGGAAGTCATCATCCAGATGATGCACATCACTAAAAATGCCCCTTTTTGTACATACTTACCAAAAAATAAGCAGAGCCCAAACATGGGGCATAAAAGTAGTTTTGGTACAAACTTAAATATCTATCTTCAAAAACTACCAAACAATGACAAGGAATTTGACTGGGACtagtttataataaaatgcagaGGGCAATGCACAAACTGTATCTTACAAAGTCATGTGAAGACAATTTACCCAACAAAAGCGCTGAAAACTATAAggttaaaaaaagtacaaaggaTGTGTCaccatacaaaaaaacaatccaaaagTACACCCCTGCAGTGTATTGTTCCACAAAGAAAAATGACAAATGCTCTTTTAGGAGGGGAAAATGTTGCAGAATATTCAAAAACTACATTCTGAAAAGAGATCAACAAACTCGAGCAAACTCATGGATGGACAAAACACAGCGGTAAGTGGAGAGACTAACAAGGCTGATGGTTTCAAAACAGTGGAGATGTTGGCATGTGGCAGTCCTGCAGATGAGTGTGGATATGTAGAAACGTAGCAGTCATTCTTCAGTAGATCCGGCCTCGACTTCGGTTTCCTCTTCCCCCGAAGCCTCGACCCCGGCCACCTCTGAATCCCCCTCTTTGCTCGTAAGAGAAGTTTCCAATGGTAGCGCTATATTTCCCACTAGGGGGGTTGTATATCTGTCGAGCATCCCTCCTAGGCAAAGGAGAAACCTTCTTTCCACCAAGGGGTCCTGCATCAGTGTCCTCTCCAGATGCACGCTTCTGCCCCAccacagctgctgctgcctcaGTTTTCTGCACTGGCTTCCAAGACAGGGTGATTGTGCTTTTGTAGGATGGAGGATTATGGAAGAGATCCTTGATGAGGACGTTGATGTTGTTGGTGATTTTGAGAGCCACAACTTTGATTTTAttCTCTTCAGTCTTTAGTGCGTCGCCAGTTTTGCCCTGCAGCGCCACACGTAGCTGCCGAATGTATACTTGCAAGCCTCGTGCAAAATACTGTAGCCTG

Function

symbol description
api5 Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in heart. Orthologous to human API5 (apoptosis inhibitor 5).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101362 True 1167 lncRNA 0.42 5 20032610 20034759

Neighbor

gene id symbol gene type direction distance location
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 59952 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 260285 19762795 ~ 19772325 (-)
LOC103021510 LOC108436943 coding downstream 283109 19730163 ~ 19749501 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding downstream 307061 19692184 ~ 19725549 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding downstream 372348 19643325 ~ 19660262 (-)
ticrr NA coding upstream 2696 20037455 ~ 20051285 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding upstream 25627 20060386 ~ 20062075 (-)
alkbh3 alkbh3 coding upstream 38747 20073506 ~ 20081335 (-)
LOC103045029 LOC108428372 coding upstream 157766 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 208607 20243366 ~ 20253823 (-)
G75106 NA non-coding downstream 159929 19871142 ~ 19872681 (-)
G75093 NA non-coding downstream 227640 19804766 ~ 19804970 (-)
G75092 NA non-coding downstream 232985 19799385 ~ 19799625 (-)
G75081 NA non-coding downstream 286165 19745564 ~ 19746445 (-)
G75069 NA non-coding downstream 344492 19640821 ~ 19688118 (-)
LOC107197502 NA non-coding upstream 66953 20101712 ~ 20129570 (-)
G75223 NA non-coding upstream 113930 20148689 ~ 20151436 (-)
G75224 rfwd3,LOC106584535 non-coding upstream 118788 20153547 ~ 20158204 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding upstream 146391 20181150 ~ 20186487 (-)
G75265 NA non-coding upstream 238016 20272775 ~ 20276444 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 583 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 166628 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 959722 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1024244 18992668 ~ 19008366 (-)
G74791 NA other downstream 1092146 18939174 ~ 18940464 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 49669 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 587882 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1030560 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1234745 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2407977 22442736 ~ 22574013 (-)

Expression


Co-expression Network