G75224 (rfwd3,LOC106584535)


Basic Information

Item Value
gene id G75224
gene name rfwd3,LOC106584535
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20153547 ~ 20158204 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101390
CAACTATGAACTAAGCTATGCAAAAGGGGAACTGGGTAATCATGAAATACATGGATTTGTTGGTTGACAAAATAAGCAGGATAGTTTAGATGAAATGAATACCGAATAGCCAAATCCTGCACAACCCAACGTCTCTTACTTTGATATTTAAAGAGCCCTACACTCCCTCATAACAGAGGTTCTTCAAATAAAATCATTACCAGGTCTGTAGGTGACAAGACAGTGTCTGCTCTCCGGTTCCacctgtatatctgtgcagccCCCAGACTCTAAAGGCAGAACATGAGGTCTGTAGGTAGTGCCATCGACATGCTCCCAGAAGCAGGCTCCCTCAAGAGAGCCAGCAATGATGCCGCCACAGGGAAAGAGACTGGAAGCAGCACGGGGAAGGTAGGACAGAGACACAACTGGACAATTGGAGCGTACTGGGGCAAGCTCCTGCACATGAGTGCTGGTGTCCCGGGTGTCGTACACCAGCACAGAGCCATTGCTTAGGCCAGCATATATGTAATTGTTGTTGTCATggcaccagcagcagctccagacaGGTTTACCAGTGTTATAGGCCTGAACCACAGTGTTTGTCCATAAGCTGGTGAGTTTGACAGTGTTATCGAGAGCAGCTGAGAGCAACAGGCTATCCTGTTGCCTGTTAAAAGAAAGGCCTCTGATCTGTTTAGCGTGGATAGGGACATAATGACTGGCTTTCAGATTCACAGCACTAATCTTCTTCACCCCATACCCAGGTACTAGAGTAGAGTGAGGGGAGGGTTGAGAGGCCAAGAGGCAGCTAAGGGGCTCACAGTAAGACAACACACGACAGCCTCCAGCCTGAGACACGAGAACAGCTTTGGAGAAGGCATAGTGTCCTCCGCTAGAGGACTCCTGTCTCTGAGACAGTGACAAAGTGGACGCCTGGGACTGAGAGGAGCTAGAGGCAGTCTGTCCCATCAACATCCGTAACTCCTGCACAAGAAAGAATGTAAAAGCAGGTTTATTGGACGTAGAAACATAGTCTAACACTATTACAGTTGACCCCAATGTATTTacagGGTATTTTTTTTGACACACTGGACAAAACTCCAGCTAGCATTTGCCCAGCACTGACTACA

Function

symbol description
rfwd3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in double-strand break repair via homologous recombination and protein ubiquitination. Predicted to act upstream of or within interstrand cross-link repair. Predicted to be located in nucleus. Predicted to colocalize with site of double-strand break. Human ortholog(s) of this gene implicated in Fanconi anemia. Orthologous to human RFWD3 (ring finger and WD repeat domain 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RFWD3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101390 True 1112 lncRNA 0.48 5 20153547 20158204

Neighbor

gene id symbol gene type direction distance location
alkbh3 alkbh3 coding downstream 72212 20073506 ~ 20081335 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 91472 20060386 ~ 20062075 (-)
ticrr NA coding downstream 102262 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 180889 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 381222 19762795 ~ 19772325 (-)
LOC103045029 LOC108428372 coding upstream 34321 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 85162 20243366 ~ 20253823 (-)
ankrd27 ankrd27 coding upstream 682300 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 711483 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 737899 20896103 ~ 20896176 (-)
G75223 NA non-coding downstream 2111 20148689 ~ 20151436 (-)
LOC107197502 NA non-coding downstream 23977 20101712 ~ 20129570 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 118788 20032610 ~ 20034759 (-)
G75106 NA non-coding downstream 280866 19871142 ~ 19872681 (-)
G75093 NA non-coding downstream 348577 19804766 ~ 19804970 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding upstream 22946 20181150 ~ 20186487 (-)
G75265 NA non-coding upstream 114571 20272775 ~ 20276444 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding upstream 120272 20278476 ~ 20284642 (-)
G75270 NA non-coding upstream 143681 20301885 ~ 20302545 (-)
G75286 NA non-coding upstream 410643 20568847 ~ 20569357 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 53297 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 121520 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 287565 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1080659 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1145181 18992668 ~ 19008366 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 464437 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 907115 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1111300 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2284532 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 3166373 23324577 ~ 23366216 (-)

Expression


Co-expression Network