G75232 (LOC108428438,LOC108274991,LOC107559147)


Basic Information

Item Value
gene id G75232
gene name LOC108428438,LOC108274991,LOC107559147
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20181150 ~ 20186487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101400
GGTCAATTAAGGTACATTATTTGATCAGGACAAACCTTTGCTTAAGACTATGCATGTGTTTGTACCTTGGCAGCATAGCTCCACATGTCGATGCGGTCCTGTAATCTCTTCTTACACTCTGGTTGTAGTCTTACACGCTTATCTTGAAGTGCCTCCATCAGACAAGACATCTGTCTTCCTCTGCCAGGGGGGATAGCAGCACACTGGTGCTTAATGTCCAGAGCACAGGCTGTATGCAGTACTGGGTCCACAAAGATATCAGCCTTACTTTCCTTCAGAATATTAAGTACCTCCTTTTTGCAGCCCTCATGTTTAATCTTCAGCAAGTTCACTTTCAGACACTCCTCCACCTGGCCTGTCTGCTCCTGTGCGGCTACCTCCTCTGCACACAGTCGCGGGATCTCGTCTGCGCACTGCACTTGTAGCTGAGGGTCCAATCTGTAGTCCAAAGCAGATTCCTGCAGAATTACCCTGATCTGGTCTTCACAGTCTGGAGAGAGCCTCTGGTCAGCATATTTAAGTTTGAGGCATGAGATAACTTGGCCCTCCAGCTCATTGTCATCTTTTGCTTTGTTCAGGATGTTCTGGCAGAACTTTGGGATGTCAGCCTTACAGGCCTTCCTCAGCACTGGGTTCAGTCGATAATCTGTATTCTGAGTGATCTGTCTCTTGGTGATCATCTGCTTGCACTTGGGGTCCATGAGCTCGCtgttcttgttctgtttcaGGCACTGCAGCATGTTCTTGGCATCAGATTCTGAGCAGAAACGCCTAATCATCTGCTTGCACACTCTCATGAGCTGAAAGTCAAGTTCAGGGTCCATCATTTCAGTTTCCTGCAGTTTAAAGATCTTCTGGTGGCATCGTGGCAACAGGCGACTCTTCGTATCCTTCAGACACTCAatcacCTGAGCATTGCCAAACACGACATTCTGACAATGTTCCTTAATGTCCTGCCTGCAGCTCTCATACAGATCTGGGTCCAGGCGGATATCTTCTGACATCTCCAGCTCCTCCACTCTGAGCTGACGGCGGCACTTCATTGAGACACGCTGATCTTTTGCCTCCTGCAAAGTGTCGTTCCTGACCATGGTGCTCAGACAGATTACCACATCCACCTTTTTCTTTATGTTAGCACAGAGTTTCAGAACATCCTCTTTGCAGGCCATCTTAAACTTGTAAGAAAACCGGAAGTCTTTCATTTGgatCAGTTGGAAGTGAGTGACTCCCACTGCACATTTTTCATTCATCTCCTTCTGGTGCTTATTGAGCACAAGACACTCCATCAGATCTCCAGTGTCTATCTGATTATCTGCCACCTCGTGGCAGTGGGACTGGATGACTGGTTCACATGCTCGGATCAACAGGGCTTCAATCTGGATGtcctcaGACTCCAGCTCAGTGAGGTTACCCACAACCTCTCTACAGTCTGAGCCCAGATCCTCCAAATGATCCTGCAGACACTCCAGCtcCTGTCCAGGTTCAGTTTTCTCACTGCACCATTTCCCCAGATCAATCATACAACGCCTCTGCAATTCTGGGTCCAGTTTCACATCTAGTGCCCTCTGGTGGAGGATTCGCTGCACCTCCGTCTTACAGTCACGCGACAACTGAAAAAACATAACAGAATTTTAGACCCAATACAGGCAACAAGCACAATAAAAGCCACACAAACCCTTTATTGGTTTCTATCTCAAACaggaaaaacactgaaacacccACTTTTGGAAAGTTTCAATGTCCAAATTATGCAGGATCACCCCACTTCCcacagcaaaatcagacaaaaatcAC

Function

NR:

description
PREDICTED: Golgi apparatus protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101400 True 1794 lncRNA 0.47 14 20181150 20186487

Neighbor

gene id symbol gene type direction distance location
alkbh3 alkbh3 coding downstream 99815 20073506 ~ 20081335 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 119075 20060386 ~ 20062075 (-)
ticrr NA coding downstream 129865 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 208492 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 408825 19762795 ~ 19772325 (-)
LOC103045029 LOC108428372 coding upstream 6038 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 56879 20243366 ~ 20253823 (-)
ankrd27 ankrd27 coding upstream 654017 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 683200 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 709616 20896103 ~ 20896176 (-)
G75224 rfwd3,LOC106584535 non-coding downstream 22946 20153547 ~ 20158204 (-)
G75223 NA non-coding downstream 29714 20148689 ~ 20151436 (-)
LOC107197502 NA non-coding downstream 51580 20101712 ~ 20129570 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 146391 20032610 ~ 20034759 (-)
G75106 NA non-coding downstream 308469 19871142 ~ 19872681 (-)
G75265 NA non-coding upstream 86288 20272775 ~ 20276444 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding upstream 91989 20278476 ~ 20284642 (-)
G75270 NA non-coding upstream 115398 20301885 ~ 20302545 (-)
G75286 NA non-coding upstream 382360 20568847 ~ 20569357 (-)
G75295 NA non-coding upstream 607997 20794484 ~ 20794959 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 80900 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 149123 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 315168 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1108262 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1172784 18992668 ~ 19008366 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 436154 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 878832 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1083017 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2256249 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 3138090 23324577 ~ 23366216 (-)

Expression


Co-expression Network