G75405


Basic Information

Item Value
gene id G75405
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21199287 ~ 21204023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101656
AAGGGTCCAAACTTGAGCTTCCCCCTTTGGGTGTAAGGAATAAAAAGTTGAGTGAGTTTTCAGCGAGGTTGTGTGTGGCTGTTCACATGGTGTCTCTAAAGAGCAGCTATAACACACAAGGCTGTCTTTAACAGAAATGTTTCAAAATCTGTAAAACTAACGGGTTCTTCACAACTGGAGCCCTTAAGCACAGTTAAAGCGTAAAGATACATTTTGGATGTGACATTCAATACTTTAACACAATAATAGTCCTATTAATAGTACATCTTGGGGGGCCTGTTTTTCCAGACACAGATTAGGCCTCATAAGCATTTATGTACATAAAAAGAATTCtcaatgaaaaaacaaagaaaaaaaaaaaaacttcctgaTGAAAGTGTCATTTAGTCCAGGCCTGAGCTAAAACTGTGTCTGGAAAAATGACCCTTTATGACAGAACCTGTAACTCTGAAACTTTATTCAGACCAATACCAGACAACTGCTTTCATAGCTTTATACAGGTTTGCTTTACACAGTTTAAGAACGGAAAGGCGCccagaaaacaaataaacaaacaaaaaaaagtctaaaatagACTTTTTAACCGTAAGACCAtcaaacaattaaatattttacataatttacaaCAGGAAGGAAATAATATTCTGCAGTTCAAAGACAAGACCGATCTCAGCATACTTATCAGCCCAAAGTCCACCATACCAGAGGCTGGAAAATTGAGGAAATAATGGAATGCATTTCTTACATTAATGAGTCACTTTTCACTCATCCCACAGAATCTTTTTTTCAGACGCAAAACAGGTAACCCCAAATCTGTGAATGGGAAACCAGTTGATCAATTTTAGTACTGTAGGGTGGAACATTGACAGCTGATGGTCTCTCTAAGAGAAGCCTCTATTTTTTCAAGCACTAATTTCTTTCATCATAAATAACATTGGCTTAAAGAAAGGAAAATAGGCAACAAAGCTCCAAATACCACTTTCCCAGGGCATGCCTTTATATGAGCACATCACCTCAGTGCATTCTCCCTGAATAAACAACTTAAATATTCAAACATGAACACTAATCGACTGCACAAAACCAGACAGATGTGGAATGATGCTTTTAACCACTGGCGCAGCAATGAAAAAAAGATGTACAGATAGAAAACACCCTACTATTTTTCTACAATGCCCTCGTGAACCAGCGTTTAACAACCAAACCTCAAAAAGGGATGTTTTCTTTAAACAGTTTTGACAAACTGTTGTTTTCCCTAATAGATTAGAAGATAAAAACTGTGCCCGAAACCAAAACCCACTATTGCCTTTATGCGATAATTCAGATCCCTATATAGACCACTATTACAGGGAAATACACAGGCTGACAGGCCCCTATGCCCAGCCAGCTTCACAATTGAAGCGATGAAGAGAGagccccatctacccacccaaagagagcatggCCTACTGTGCTCTGTTGAGCCCTGGCTGCTGATAGGGTACACTGTTTGTATATTCTAAATTATGGTGCATTGTGAGACTGTTAAGAGTTACATTTTAGACAGCACTACAAAATGGCAGAAGCCagtagtgcactatatagtgGGAACTAGGGAACAGTATCAGACACAGCCACAGTTTCCAGTAGTTACAACAATCAATTAATAAGGTTAAAAGCAGAGTTATACCTGAATAATAGCTAAAAGTCAGATAGGGACAATGTGAAAGTCTTCTCACTCATTCTTCTGCATCATGTATACAGTGCTCAGGGGCTCATGTTCACACAAAGCAGCTCAGTGTACAGTGGCCGATTCGGAACGTTTCGGTTTCAAGCATGCTGTTGAAtgggataaacagtaacagagGTAATCTGATCGCAGATCAACTACTCTAAGATTCATCACGCAGACAGGCCCAGGTAAAATAATGACAAGTGCATTTCAAACTCAAGTACATTTCAAGACTGGTTCAGTCAGTGTCcaatttaacaacaaaaaaaaatcataattcataaagaaaaacaaactaaaacacaaataaatgcacACAAATTCAGCAAAACAGTTTACATGGCTAAATTACAAGAAAAGCATAAATCCAGCCCAGACTCTCTCATCCACCCCACCAGGAGGTGCCACTGAGATCATAGTGTTTCCAAACAAACTGAATCACACATTCACAATCAAACTCACAAATTGTCAACATGTACACTTAAAAGCAGTGTACATGCAcatcataacacattataacaaCTTTACTTTGAGGCATGGttcattaaaatacaaaataaatgttggtTTTGTTTCAAggcaaaatctgaaaaaagtacATTTCCATCTTTTTAGACTGTAAGTGGTAATCAATaggcaaaacaaaacaagcataacattaaaaacaacaaaacaagcgtcttaaaagtagaaaaaagtaGAATTAATGCTATAAACAGGCGGCTGCTCATACATGGAAAAACTCACAAACACATCAAAAAGCTAGTAGTTTTGAGGACCAAAGCAAAAACAGAAGGTTCAAAAAGACGCAGAAGAACCGAACATGACGCATATAAAAAACTCTGAATAAAAAGATCTTAGGCATGAAACACACTTCACGCAAATGCACAATCGCACTGTACAAACTCAACATGTGTTGCTTTGTTACTGGTTAAAACATTAAGTAGTCAGCATCTGTAAACAGAATTCAATTCCTGCCATGGAAATAACATGCTGGCAGTACAAGACAACGTGTTGTGAAATGCACTgagatgtatttttaaatgctattaATTTTCCTGTAAAACTCAGTCTGCGTTCACGTGCTTTGCATGAAGTATGTTTAGGGCCTTAGCTTTTACCTCTTAGCTTTCACCATTACAGCAGACATCTCCACATAGTCTGAGAAGATGTATTGATCAGTCACATAatcatatattaattttatccaCGTCCTGTCTCTGATGCAGTTTGGGCCTTCTGAGTCATCTTTAGCTCTAATACCCATAtccacaataataaataacacttcaACTCTGTTAGGCTTTGTTTTGTTCAAAGGGTATTCATATTCTCTTAAATACAGTTATAGGACAGGGGGTGGTCCAAAAAAAAGGAACTCAGAAACTTAGCAATTATCTATTTAATGATGCAGGTTTTAGACTGGGTTCCTTACCCAGCTAAAATGGCTGGTGTGAGTGCAGCTCTGTAGAGTCAGTCAGTCTAGTTAAGGCATTACACAGTACGGCCAGCAGGGGACACAAGAGCAGAGGCCTGAAGTGATTGATGTGAGAGAGCAACTCTTCCTCTTTCCTCCTCCTTACTGTACAAAATCACACTCATGTACACAGAATccccacataaaaaaaagactaaattaGTTGGAGTTGTCTGTAGGGGATTAATCAACACaaaaaaaaaagagtgtgagaaaacgaagagagggagagtgcgAGAGTGCTCCGGGAAAAGGCAGCTGAGAGATGCTGAATTGCAGCAATTAGCACACGCGCTATGCAGTCTCGAGCTAAATCTTGGTGGTACTGAACTGGGTTCTCCGGTTCTCTTTACACCTGCTGTAAACGTAGTTGGGGGGAAGCCATGGGAGAGAAGATCATGCAAACTAcaatacagttaaatacacagtttcATGAAATATGGCTTTTGGTTATCTAGTCAGAACATCTCACATGCTACGAATACCTTCAGGataaatactttaatatatgGATTAATCTTTCAGCTTTTTAACTTGAGGGACGAGTATCAAATATCCTTCCGCAGGTTAGTCCTCTATGCCGAATGCCTTCAGAACTGCAAGAACTGCATACACTTATACATACAGACATGGTATGTATTGCACTTTTCCATGCGATAGGGTTTCTGCCTACTGTAACACACTCCCGCTAACTGTGATTGTCATGATGTGGGGTGTGGGAGTGTGGCGATGTGTGTGAAGGGCTAAAACACCATTCCTATTGTCTGTGCCCCTGAATGATTCAGAATGAGGGTTTATTTTGTGGTGACACCACTGTGCACATCTCCATAGTGTTGGTATTGCTGACATTTGGTTTAAATCAAATGAATGACGAGTACACAGAGTGGACATTTATATTCAGTCTGCACTGCAGTAGAAAACACTGTGCACTGGAGTGTGAGCATATTGTGCTATGGAGTCTCGGTACCACCAGGTGATGCATTATccctttaataaactaaaataagaaagaagaaggagacaaagaactttaaaaaggccagacagacagaaatgcaAGGAAGGCCTTGAGTTATTTCGATGCTTGGGAGGGAAGCAGAGGACACTAGACGTCCTACCAAAATGTCCACCATAGCTAAATGAGACCCTGCAGGAGAAATGCAGCAAGATGGTCCTCTATTTGACTGGCTCTTCATTAGGACAGTCCTCcacaaaaacaaccaaaaaaaattcaaaataaaaaaatctaaataaaaaggcAGAATACAAGAAGAGTGCAAGGTGGGAGACAGTCACACCCAGCAGATGCCTCTGGACTTTTAAGGAGTCGGTCTAGGGTAATAAACCCAATGGTGTGTTTGTATAAGCCTGTTAGGTCCCAGCCGTGAGTGGCATTCCCTGGAGAGGCTGGAGAGACATCAGCAGTGCAGAGGAAATAAGGAATATTTTGGCTCATTTGTGCCTGGGAGAATTCTTCTTCCTCTTTCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101656 True 4675 lncRNA 0.39 3 21199287 21204023

Neighbor

gene id symbol gene type direction distance location
srpk2 LOC108428417,LOC106560984,LOC108248824 coding upstream 11851 21100409 ~ 21187436 (+)
chid1 chid1,LOC107655144,LOC107674841 coding upstream 134446 21059432 ~ 21064841 (+)
thoc5 thoc5 coding upstream 141447 21047896 ~ 21057840 (+)
LOC103046250 LOC103046250,LOC108428357 coding upstream 177416 21017454 ~ 21021871 (+)
LOC103038014 NA coding upstream 201221 20991758 ~ 20998066 (+)
LOC103044722 LOC108428364 coding downstream 66715 21270738 ~ 21273031 (+)
LOC103046854 NA coding downstream 70919 21274942 ~ 21293323 (+)
LOC103047162 nell2,LOC108428412,LOC107695006,LOC107710867 coding downstream 113509 21317532 ~ 21460874 (+)
LOC103047464 twf1,LOC108428409 coding downstream 362345 21566368 ~ 21578864 (+)
LOC103046961 LOC107694983 coding downstream 440615 21644638 ~ 21745964 (+)
G75390 rps17,rs17,LOC106527967,LOC107389132,LOC103042467 non-coding upstream 3516 21190766 ~ 21195771 (+)
G75403 NA non-coding upstream 50938 21147808 ~ 21148349 (+)
G75381 NA non-coding upstream 152007 21046815 ~ 21047280 (+)
G75342 NA non-coding upstream 222974 20975967 ~ 20976313 (+)
G75323 ankrd26,LOC108428422,LOC105913370 non-coding upstream 252263 20945613 ~ 20947024 (+)
G75413 kiaa0101 non-coding downstream 32569 21236592 ~ 21238466 (+)
G75577 NA non-coding downstream 546903 21750926 ~ 21751248 (+)
G75627 NA non-coding downstream 828136 22032159 ~ 22032470 (+)
G75664 NA non-coding downstream 1235007 22439030 ~ 22439325 (+)
G75689 LOC103026897,LOC108428397 non-coding downstream 1426171 22630194 ~ 22633409 (+)
G75391 pus7 other upstream 102381 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 174159 21023256 ~ 21025128 (+)
LOC103028745 NA other upstream 991332 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1661670 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 1737100 19459958 ~ 19462187 (+)
mov10l1 NA other downstream 46444 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1550950 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1577712 22781735 ~ 22815522 (+)
G75938 LOC105900730,LOC105912833 other downstream 2283507 23487530 ~ 23487870 (+)
G75974 NA other downstream 2711768 23915791 ~ 23917603 (+)

Expression


Co-expression Network