gatd1 (pddc1,LOC102788149)


Basic Information

Item Value
gene id gatd1
gene name pddc1,LOC102788149
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21065319 ~ 21071246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101676
aacaacttgtaTATTTTTCTCTCTGCTGTGAATAAAGTTGAGTGCGCTTTTACTCGTGCTGTGTTCAGGTTTATTCACTGTGTGCCTTTGGGACTGTTGGTCGGTGTTTTTAGTGAGGTTCAGCGGAGCGGAGCGGGTCTGTAAACAGCGCGATGACTTCTAAAGCCACCTGCCTTATAGTGGCCAGCGCAGCGCCTCAAGGGGAAGCCCATTGACTTCACTGGGGTTGATGAAAGCTGCTCTCGGTGGGTTCAGGACTTCAGCATCAAGCCCTACGCCAATCCTGCCAAACTGGAATCCATTGATGGTGCTCGTTACCAGGCCCTGCTGATACCAGACTGTCCAGGAGCTTTGAATGACCTCGCACACAGTGGCTCACTGGCACGCATTCTAGCCCACTTCATCTCTCAGAAGAagCCTGTCTGTGCTGTAGGACAGGGCGTTTCTGGTCTCTGTTGTGCCACAGAAGGACAGAAatggatatttagtggatacAGCCTGACTGGAccTTCTGTGTTTGAGTTGGTGCGTTCTCCAGATTTTGCCAACCTTCCTCTGATCGTGGAGGACTTTGTGAAAGATAATGGAGGATCATACACAGCCAGTCAAGAGGATGCAGTACATGTGGTGCTAGATCGCCACCTAGTGACTGGTCAGAATGTTCAGTCCACCACAGCTGCAGTCAACAACCTCATCCTGCTCTGTAATGGCCGGTAAAAGACTCCCATTCAGGAGCTCTAATTCACCGTCACCTGGACTGTTTGGTGAAGCCAGGAGAGGACAGTGCTACATGATGGACATGTGGACCAAATATAACATTGCATGAAAATATAGAAATGAAAAACGATATCTGTGAATGTGACCATTTTGTTGCCTTAAAGTATAAAGTTTCCAATTACCGAATAGTTGGAGTTTGGAGGCACTTTAGACATTTGtcttactcaaaaaaaaaaaacaacaacaagtgCAGAGAAAGACTGTATGTCCTGTTATTTTCTCACAGGAAGTCATGTGATATTCCTGTAATCCTGTAAAACCTTCAAGTATAGGCATCTTTCATTTTTGTCTCTAAAAACACTTTGATTCAAAAGTTTGAAatcagtgttttcagtgttataAAACCTTTTTGGTTGCAGATAAATATGTTTGGTTCTGgtttacacagtaaaaacaaGTGATTCTGAACTTTTGAACAATAGTGCAGGTAGAAAACGAATAAAATAGGAACGTCTGACCATTCCATATATGTTAATGTTGAATTACTTATATTGTCTTATTGCCATGTTAAAAAAAGGTAGTGTTGATTGGAAGACACAAAGTCTGCAGTGTGATGCAGGTAATGATATCTGAGGACTTGAAGATTACTCTGTGTGATAAGTGTTGGTTCAAAATCAAACCTTATAATCATGTTTGTTGTTCTGTTGTTGATTCACATTGTGACAAAGAATCACTGTAGTCACTACACCATTTACAGGGAATACAGAATGTGATTCaattgaaatgttttaatttttcatataGACTGTGTTGCTGAATAACTATATTaagtaaaacattttgaccA
>XM_007244300.2
TTTCGAGGGGAAACTTTAGTCGAtggaacaatgaaaaaaaaaacaacttgtaTATTTTTCTCTCTGCTGTGAATAAAGTTGAGTGCGCTTTTACTCGTGCTGTGTTCAGGTTTATTCACTGTGTGCCTTTGGGACTGTTGGTCGGTGTTTTTAGTGAGGTTCAGCGGAGCGGAGCGGGTCTGTAAACAGCGCGATGACTTCTAAAGCCACCTGCCTTATAGTGGCCAGCGCAGCGCCTCAAGGAGTGTGTGCTCGATCTTTCCAGCAGTCCTTCTCCCTCTGCAGTCCAATATTCAACCTCCAGACAGCCACACCTGGGGGGAAGCCCATTGACTTCACTGGGGTTGATGAAAGCTGCTCTCGGTGGGTTCAGGACTTCAGCATCAAGCCCTACGCCAATCCTGCCAAACTGGAATCCATTGATGGTGCTCGTTACCAGGCCCTGCTGATACCAGACTGTCCAGGAGCTTTGAATGACCTCGCACACAGTGGCTCACTGGCACGCATTCTAGCCCACTTCATCTCTCAGAAGAagCCTGTCTGTGCTGTAGGACAGGGCGTTTCTGGTCTCTGTTGTGCCACAGAAGGACAGAAatggatatttagtggatacAGCCTGACTGGAccTTCTGTGTTTGAGTTGGTGCGTTCTCCAGATTTTGCCAACCTTCCTCTGATCGTGGAGGACTTTGTGAAAGATAATGGAGGATCATACACAGCCAGTCAAGAGGATGCAGTACATGTGGTGCTAGATCGCCACCTAGTGACTGGTCAGAATGTTCAGTCCACCACAGCTGCAGTCAACAACCTCATCCTGCTCTGTAATGGCCGGTAAAAGACTCCCATTCAGGAGCTCTAATTCACCGTCACCTGGACTGTTTGGTGAAGCCAGGAGAGGACAGTGCTACATGATGGACATGTGGACCAAATATAACATTGCATGAAAATATAGAAATGAAAAACGATATCTGTGAATGTGACCATTTTGTTGCCTTAAAGTATAAAGTTTCCAATTACCGAATAGTTGGAGTTTGGAGGCACTTTAGACATTTGtcttactcaaaaaaaaaaaacaacaacaagtgCAGAGAAAGACTGTATGTCCTGTTATTTTCTCACAGGAAGTCATGTGATATTCCTGTAATCCTGTAAAACCTTCAAGTATAGGCATCTTTCATTTTTGTCTCTAAAAACACTTTGATTCAAAAGTTTGAAatcagtgttttcagtgttataAAACCTTTTTGGTTGCAGATAAATATGTTTGGTTCTGgtttacacagtaaaaacaaGTGATTCTGAACTTTTGAACAATAGTGCAGGTAGAAAACGAATAAAATAGGAACGTCTGACCATTCCATATATGTTAATGTTGAATTACTTATATTGTCTTATTGCCATGTTAAAAAAAGGTAGTGTTGATTGGAAGACACAAAGTCTGCAGTGTGATGCAGGTAATGATATCTGAGGACTTGAAGATTACTCTGTGTGATAAGTGTTGGTTCAAAATCAAACCTTATAATCATGTTTGTTGTTCTGTTGTTGATTCACATTGTGACAAAGAATCACTGTAGTCACTACACCATTTACAGGGAATACAGAATGTGATTCaattgaaatgttttaatttttcatataGACTGTGTTGCTGAATAACTATATTaagtaaaacattttgaccACA

Function

NR:

description
Parkinson disease 7 domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101676 False 1564 lncRNA 0.41 6 21065321 21071205
XM_007244300.2 True 1684 mRNA 0.42 7 21065319 21071246

Neighbor

gene id symbol gene type direction distance location
LOC103039177 NA coding downstream 18013 21043481 ~ 21047306 (-)
morc2 morc2,LOC107674835 coding downstream 23289 21021966 ~ 21042030 (-)
LOC103038341 LOC108428358 coding downstream 57673 21004053 ~ 21007646 (-)
LOC103036040 ankrd26,LOC108428422 coding downstream 90570 20939918 ~ 20974749 (-)
LOC103034889 LOC108428424,LOC108274948 coding downstream 137045 20923738 ~ 20928274 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding upstream 809 21072055 ~ 21084451 (-)
pus7 pus7 coding upstream 17373 21088619 ~ 21098682 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding upstream 118799 21190045 ~ 21197519 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding upstream 128004 21199250 ~ 21235118 (-)
pclaf kiaa0101 coding upstream 165386 21236632 ~ 21238194 (-)
G75424 NA non-coding downstream 172 21064348 ~ 21065147 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding downstream 1699 21061458 ~ 21063620 (-)
G75367 NA non-coding downstream 78557 20986194 ~ 20986762 (-)
G75366 NA non-coding downstream 79667 20979402 ~ 20985652 (-)
G75357 LOC108428367 non-coding downstream 151233 20912831 ~ 20914086 (-)
G75444 LOC108428417 non-coding upstream 101376 21172622 ~ 21175068 (-)
G75447 NA non-coding upstream 113629 21184875 ~ 21187745 (-)
G75451 NA non-coding upstream 174018 21245264 ~ 21245530 (-)
G75542 twf1,LOC108428409 non-coding upstream 495076 21566322 ~ 21575655 (-)
G75550 NA non-coding upstream 512119 21583365 ~ 21584651 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 317111 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 965069 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1033292 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1199337 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1992431 19070938 ~ 19072888 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 198258 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1371490 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2253331 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2755968 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 3169652 24240898 ~ 24260530 (-)

Expression


Co-expression Network