G75426 (chid1,LOC107674841,LOC107655144)


Basic Information

Item Value
gene id G75426
gene name chid1,LOC107674841,LOC107655144
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21061458 ~ 21063620 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101682
TAGAGAAGTCTAATGATTAGCTGGGTTGATTGTACATGCAAAAGTGCCACAGAgagctatatagatttttttttttatgtttcactagTTATATTTTAGATGAAAAACATCAGAACCCATACCTGCCCCCTAACAGAGGCTCAGCTCCACCTTGGCTAGAGAAGTCCAGGCCATACATGTTTAGTCCCAGCAGTATCTTGTGTCTCCACTGAGTTTGTGGTGCAAGTTTCAGCACACACTCTCGCATCCAGGGCAGAGGGGAACTGGGGCCAGGCctgccaggagtggaataatCATAAGTCATCAAACTAAATCCATCCACAACTGGAGCCAACTTCTCAAACTCTTCCTGCCCAAACATGCCCGCCTGGTTTGTCCCAGGACTGATAGCTGGAGGAATGACCAGAATGCAGGTAAGCTTCCCAGCCTTCAGGAACTTGCACAGGTGTGTGATCAGGTGGACCAACTCCtTTCTTTTGTTTCCTCCCAGCTGACTCCAAAGTTCCAAAGTGTAGCCATCAAATCCCTCAGCCTTTGCCACTTCGGTAACCTCTCTTCCAATCTCTTCAATCTCATCCTCACTGTCCAGCACACTCATATAATCCTGATAAGACCAGCCATCAAATAACAGCCGAGGTAatattttatttttcttatttgctTTCCTCAC

Function

symbol description
chid1 Predicted to enable oligosaccharide binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Predicted to be active in extracellular region. Is expressed in hatching gland; notochord; and polster. Orthologous to human CHID1 (chitinase domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101682 True 670 lncRNA 0.46 6 21061458 21063620

Neighbor

gene id symbol gene type direction distance location
LOC103039177 NA coding downstream 14152 21043481 ~ 21047306 (-)
morc2 morc2,LOC107674835 coding downstream 19428 21021966 ~ 21042030 (-)
LOC103038341 LOC108428358 coding downstream 53812 21004053 ~ 21007646 (-)
LOC103036040 ankrd26,LOC108428422 coding downstream 86709 20939918 ~ 20974749 (-)
LOC103034889 LOC108428424,LOC108274948 coding downstream 133184 20923738 ~ 20928274 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding upstream 8435 21072055 ~ 21084451 (-)
pus7 pus7 coding upstream 24999 21088619 ~ 21098682 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding upstream 126425 21190045 ~ 21197519 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding upstream 135630 21199250 ~ 21235118 (-)
pclaf kiaa0101 coding upstream 173012 21236632 ~ 21238194 (-)
G75367 NA non-coding downstream 74696 20986194 ~ 20986762 (-)
G75366 NA non-coding downstream 75806 20979402 ~ 20985652 (-)
G75357 LOC108428367 non-coding downstream 147372 20912831 ~ 20914086 (-)
G75295 NA non-coding downstream 266499 20794484 ~ 20794959 (-)
G75286 NA non-coding downstream 492101 20568847 ~ 20569357 (-)
G75424 NA non-coding upstream 728 21064348 ~ 21065147 (-)
G75444 LOC108428417 non-coding upstream 109002 21172622 ~ 21175068 (-)
G75447 NA non-coding upstream 121255 21184875 ~ 21187745 (-)
G75451 NA non-coding upstream 181644 21245264 ~ 21245530 (-)
G75542 twf1,LOC108428409 non-coding upstream 502702 21566322 ~ 21575655 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 313250 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 961208 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1029431 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1195476 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1988570 19070938 ~ 19072888 (-)
gatd1 pddc1,LOC102788149 other upstream 1699 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 205884 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1379116 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2260957 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2763594 23827214 ~ 23833068 (-)

Expression


Co-expression Network