G75444 (LOC108428417)


Basic Information

Item Value
gene id G75444
gene name LOC108428417
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21172622 ~ 21175068 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101705
CTTTGGGTGTGTCCCCAGTGCTGGATGATGAGACAGTGCGGCTGCGGTCAGCGTTGGGGCTCAGCGGGGGCTCTCCTTCGTCTTGCCCACATTCTCCTGGTTCAGGGTCCAGGGGCAGCTCAGGAAAGCGCGGGGCAGTACCCCGGTGTCTCGCCCCATTAGTGAGTCCAACTGTCTCGCCATTAAATAACTCATAGGAGGCGTCAGACGCATCTCTGTCAGTGGTGCTGATCTCAGACTCCACCAGAGGGCAGAGCAGAGGTGAATGGGAGGGAGAGGGAACTGGGAGCACTTGAAGTGACTTGTGATCACGGCCTTTTGCATTCAGGATCACGTGACCATTGGTTTTCGGGGTGTCGTTTTGGTCCTCTGTGGAGTTCCTAAGCTCCTGTCCTTCATCATCTGCTTCgtcatcttcttcatcatcatcttcgtcgtcatcctcatcctcttcttcttcatcatcatcttctgCACCTTCTGTTCTGTCTTGCTCTTCttgttcttcctcttctttgGGTTGGTCAGGTTGCTTCTCCTCTGTGCACTCGTCTGCCTTTGGCTCCAGCTGGTCACCAGTGGACACGATTTTGGGCTCCTCCTcagctctctttttctctacctGTCCTGGTTCAGGATCATCTTCAGTTGctgttttctcctcctcttcttcttcagtTTCCTCTCGCTCCTCTTCCTCATCGACCTCCTCATTTGCAGGGCTGCCCTGCTTCTGTAGCGGAGGAGGCGTGATATTCTCTCTTTCAGTTGGGGGATCTTCATTGTCTGAACTGACATGTGTGTTGGGAGCTCCCTCACAGTCTTCATCTTCCTCCTGCTGTTGTTGCTCTGGAGGTGCAGCACATGTGTGGTTAGTGAGCCGGACTGGccgctctttctctccctctccttcttcctcttcctccacctcttcatcatcttcatcctcatctTCGCTATCTCCCAGGGCTAGCGTGGGCCCTGGCGGTGGGTTTAGGCCTTCGTTGGCCTTTTGTTTTTCTGCCTCCCTTTCCAGTGCCTCGATCTCCAGCATGCGTCTCTCTAACAGCTCTGCCTGacgcttctgcttcttctttagtttcttctttttgttcttgGAGATCTTCCCCACC

Function

NR:

description
PREDICTED: SRSF protein kinase 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101705 True 1133 lncRNA 0.53 2 21172622 21175068

Neighbor

gene id symbol gene type direction distance location
pus7 pus7 coding downstream 73940 21088619 ~ 21098682 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding downstream 88171 21072055 ~ 21084451 (-)
LOC103039177 NA coding downstream 125316 21043481 ~ 21047306 (-)
morc2 morc2,LOC107674835 coding downstream 130592 21021966 ~ 21042030 (-)
LOC103038341 LOC108428358 coding downstream 164976 21004053 ~ 21007646 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding upstream 14977 21190045 ~ 21197519 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding upstream 24182 21199250 ~ 21235118 (-)
pclaf kiaa0101 coding upstream 61564 21236632 ~ 21238194 (-)
LOC103045028 NA coding upstream 118291 21293359 ~ 21299682 (-)
tmem117 tmem117 coding upstream 300677 21475745 ~ 21559492 (-)
G75419 NA non-coding downstream 106219 21042107 ~ 21066403 (-)
G75424 NA non-coding downstream 107475 21064348 ~ 21065147 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding downstream 109002 21061458 ~ 21063620 (-)
G75367 NA non-coding downstream 185860 20986194 ~ 20986762 (-)
G75366 NA non-coding downstream 186970 20979402 ~ 20985652 (-)
G75447 NA non-coding upstream 9807 21184875 ~ 21187745 (-)
G75451 NA non-coding upstream 70196 21245264 ~ 21245530 (-)
G75542 twf1,LOC108428409 non-coding upstream 391254 21566322 ~ 21575655 (-)
G75550 NA non-coding upstream 408297 21583365 ~ 21584651 (-)
G75554 NA non-coding upstream 451001 21626069 ~ 21626282 (-)
gatd1 pddc1,LOC102788149 other downstream 101376 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 424414 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1072372 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1140595 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1306640 19859694 ~ 19865982 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 94436 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1267668 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2149509 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2652146 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 3065830 24240898 ~ 24260530 (-)

Expression


Co-expression Network