LOC111193105 (LOC102794092,LOC108274651,LOC107571202,LOC108428364)


Basic Information

Item Value
gene id LOC111193105
gene name LOC102794092,LOC108274651,LOC107571202,LOC108428364
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21269504 ~ 21273017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU101746
CATTTATTAGCTATGTTatattcacaaacacacaacagacacacataaatacagcaATATCTGAATAGAAAATACTATCTTTACAAATCATTTAACTCTactttactgattttttttactgtacaatTAACTCTATAGGCTCATTATTTACAGAGTGCATTCAGTCAGAATTCATGTGCTCAGAAAGCTGCGTAGGAGTCCCACTGGCGCCCCATAGGAGTGGGGGTCAGTCCGGAGCGGGGGGGGGCAGATCCAGCACGACCCTCAGCTACGACCCCCGCTTTaaccagcacacacacttacactcacataCAGTAaagttatatactgtacatacatgtGTGTGCGGTGCGGTGCGGGCCAGTGTTCGTTCAGCACTCCTGACCCCTGTGGTTTGTTAGTGGTCAGTTTTCCAGTATACACTGGGAGCGATGCTCAGTCTCCCGCCTCTCTCAGCACTTGTGCTGCTTCCACTTGCGCGCGGCCGTGGCGATGTGCGCGTCCTTCTTCAGCCAGGGGAAGAAGTGGGTGACGGTCATGGTGCCGTCAGCGCGAGCTCGGCCGGTCAGCAGGTAGAGCTGCGCGCGCCCAGGCCGCACCAGCTCGTGCGCGCAGCGGAGGTTGAGCAGCAGCCAGTGCTGCAGCAGCTGCGCGGCGCTGTAGGGCAGCAGAGGACCGCGCTCAATAAACTCCAGCTTCCCCTCCACCTCCAGCTCCGGCTCAGCAGAGGGCAGGCGCCGCCGGTACAGCTTAGCTTTAACCGCTgtgggacagagagagacaggcgtgtgtggaAGAGTGTGTGAGCAAAATAGGAGACTGACTGACCTTTAGGGAAGTTGCTGATGTGTTTGGGCAGTGGGGTCAGACACATGTCCTCCTGAGCAGGGAAGCGATCGCAGTCCAGAGCTTCAGGCCAGGAGTGGCCGTGACAGGCCAGAACAGGAGCACAGCTGTCCCTCACAACCACACACAGGCTTCGGCAGGGCTGGATGAACCTACACACAAGATAAAGACAGGAGCGACGAGGGAGCAGAGGAAGGCCTGGGCCTGAGGATGGCAGCCTGTCTGCAGCAAAGTGCGCCAGTTCTCTGAGTGAGGGATCACCTCGTCCTCCAGGCTGCTGTGGCCCAAGAGGTTGGGCAGTCTCATCTCAGAGTACCCCACGTCGTGGCACACACTCAGCTGGTGAGGTATAGGCACACAGCGAGTGGACTGGCCCAGGTCGAAGGCCTCAATCTGAGCAAAGAGGGTCAAAGCAAGCAGGGTGAAGATGAGAGCCATAGTTCCAGAGAAAGTGGTGGTCCTGTGAGAAGGGATCGTCCAAAGCTGTGAAGGTGAAGGTGCTGGAATggttgtgagtgagtgagatcCACTGGCTTATATACAGGTAGGGCAGAGCCAGCCAGGGCTGTTATCAACGACCTATCAAAGAGGTGCAGACGACGCGTCAAGCAGGGGATAACTACACGCAGACGCAGGGGGACTGAAAGGGAGGGGGGCATTAAATAAACAATCAAAGGCTCAGAATGCTCCAGCCCATTAAATGATGCACACCGTCTGCAGATGTCTGTACATTCACTTTAATGGTGTGTGTGGGCCTTGTTAAAATCAAAAAGCACACATCACTGTACTGAATACAACAGACATTCTTCAGACATAGTTCATTAAAGCAAAATGAGGAGTGCTGAGATTTGTACACGTATCACAGATCAGTTAAGACACAACACAGTGAATTATATAGCTTATTATGAGTAGACCaagagaaatgctccaaaaagttacctgatttttttttttacattgaatatTAACCAggtttttccttctcctgtaaagatgacattttggagatgacaattgtttttgtgtgacagcaacAATTATAATAGTACTATACAAAAACTAACTTCATAAAAATGTTACCTTCTCAGAATTTTAGCATAAATTTAaaggtaatttaaaatatatttt
>XR_002650260.1
TAATAttagttaatgttattttaaattaataaatatttattttattatctggtgtgtatgagtgtgtggaAGAGTGTGTGAGCAAAATAGGAGACTGACTGACCTTTAGGGAAGTTGCTGATGTGTTTGGGCAGTGGGGTCAGACACATGTCCTCCTGAGCAGGGAAGCGATCGCAGTCCAGAGCTTCAGGCCAGGAGTGGCCGTGACAGGCCAGAACAGGAGCACAGCTGTCCCTCACAACCACACACAGGCTTCGGCAGGGCTGGATGAACCTACACACAAGATAAAGACAGGAGCGACGAGGGAGCAGAGGAAGGCCTGGGCCTGAGGATGGCAGCCTGTCTGCAGCAAAGTGCGCCAGTTCTCTGAGTGAGGGATCACCTCGTCCTCCAGGCTGCTGTGGCCCAAGAGGTTGGGCAGTCTCATCTCAGAGTACCCCACGTCGTGGCACACACTCAGCTGGTGAGGTATAGGCACACAGCGAGTGGACTGGCCCAGGTCGAAGGCCTCAATCTGAGCAAAGAGGGTCAAAGCAAGCAGGGTGAAGATGAGAGCCATAGTTCCAGAGAAAGTGGTGGTCCTGTGAGAAGGGATCGTCCAAAGCTGTGAAGGTGAAGGTGCTGGAATggttgtgagtgagtgagatcCACTGGCTTATATACAGGTAGGGCAGAGCCAGCCAGGGCTGTTATCAACGACCTATCAAAGAGGTGCAGACGACGCGTCAAGCAGGGGATAACTACACGCAGACGCAGGGGGACTGAAAGGGAGGGGGGCATTAAATAAACAATCAAAGGCTCAGAATGCTCCAGCCCATTAAATGATGCACACCGTCTGCAGATGTCTGTACATTCACTTTAATGGTGTGTGTGGGCCTTGTTAAAATCAAAAAGCACACATCACTGTACTGAATACAACAGACATTCTTCAGACATAGTTCATTAAAGCAAAATGAGGAGTGCTGAGATTTGTACACGTATCACAGATCAGTTAAGACACAACACAGTGAATTATATAGCTTATTATGAGTAGACCaagagaaatgctccaaaaagttacctgatttttttttttacattgaatatTAACCAggtttttccttctcctgtaaagatgacattttggagatgacaattgtttttgtgtgacagcaacAATTATAATAGTACTATACAAAAACTAACTTCATAAAAATGTTACCTTCTCAGAATTTTAGCATAAATTTAaaggtaatttaaaatatattttggacCGTTTGCTTTGGCATTTATGATGAAATTTATCAacaatttgtaatatttgtaattgtaataaaatacaaGATTTTGGTCCGGCTGCaataatattaatgattaaGTTGGGgattacaatgttttttgggGATGAATCTGAAATGAAGACACTAATTAAaccttacatttttattacgTTTTTTTGCTGCTGGTCATGTATACAGTTCTTATTTTCACCAGAGGCAGATTACATTTGCcatatatcatttattttactccagaCTTTGCTATACAAATATTATTGATTATATAACATGACTTTGGGAGAACTGTGATCAAAcgttctttatattttattctttatttattttatttatagatattatggaaaaataaaaataaataaaaatgttagtttttttccaatatcatgcagccctagaaCACATAATGGTAACCAtgtaaaaacacagacatttgaCTAGTAAACAACTCATAATGAGTCTGTTTTAAATGACCAGAGTAAACTAGAATGTTCCCCTACTCttgttaattattataaattattttttgactTTGTACAGCACTGTGCCATGCAATGTTTTATTAGCTAGGTCTCCTCCAGTATCTCAGGTGTAAAA

Function

NR:

description
PREDICTED: secreted frizzled-related protein 5-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0007420 brain development biological_process
GO:0050821 protein stabilization biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101746 True 1974 TUCP 0.50 3 21270129 21273017
XR_002650260.1 False 1874 lncRNA 0.40 2 21269504 21271562

Neighbor

gene id symbol gene type direction distance location
pclaf kiaa0101 coding downstream 31310 21236632 ~ 21238194 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding downstream 34386 21199250 ~ 21235118 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding downstream 71985 21190045 ~ 21197519 (-)
pus7 pus7 coding downstream 170822 21088619 ~ 21098682 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding downstream 185053 21072055 ~ 21084451 (-)
LOC103045028 NA coding upstream 20342 21293359 ~ 21299682 (-)
tmem117 tmem117 coding upstream 202728 21475745 ~ 21559492 (-)
irak4 irak4 coding upstream 305895 21578912 ~ 21591254 (-)
LOC103022647 NA coding upstream 639507 21912524 ~ 21946943 (-)
pdzrn4 pdzrn4 coding upstream 778221 22051238 ~ 22145393 (-)
G75451 NA non-coding downstream 23974 21245264 ~ 21245530 (-)
G75447 NA non-coding downstream 81759 21184875 ~ 21187745 (-)
G75444 LOC108428417 non-coding downstream 94436 21172622 ~ 21175068 (-)
G75419 NA non-coding downstream 203101 21042107 ~ 21066403 (-)
G75424 NA non-coding downstream 204357 21064348 ~ 21065147 (-)
G75542 twf1,LOC108428409 non-coding upstream 293305 21566322 ~ 21575655 (-)
G75550 NA non-coding upstream 310348 21583365 ~ 21584651 (-)
G75554 NA non-coding upstream 353052 21626069 ~ 21626282 (-)
LOC111193107 NA non-coding upstream 448628 21721645 ~ 21724907 (-)
G75584 NA non-coding upstream 537523 21810540 ~ 21810761 (-)
gatd1 pddc1,LOC102788149 other downstream 198258 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 521296 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1169254 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1237477 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1403522 19859694 ~ 19865982 (-)
LOC103024007 LOC108428399 other upstream 1169719 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2051560 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2554197 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2967881 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 3518175 24791192 ~ 24798616 (-)

Expression


Co-expression Network