LOC103028957 (rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937)


Basic Information

Item Value
gene id LOC103028957
gene name rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22754973 ~ 22780959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102047
agcagcagcagcagcgtccGTGGCGGCTGCCGCTGCAGCACGACGGTTGCTTTTCTGTCCACCGCGTTCCAGCAGGCTCGCGCTCGCGCTGCGGGTTTAGTGCAGTAGGGAGGAGCGCGGTCTCGGCTCATGCTCCATCCGGCTGCTCGGCTGAAGGAGAGGGTAACTGGTCGCGGTCCGCCGCCGCTATGCGCACCACCcggagagctgctgctgctcctctcTGAGATGAGGCCTACATGTTAAAGCTCGCTCCCCCTCCtgctcctccaccaccaccacctcctcctccttctccccGCGAGAAATCTCACCGTGATGGCTGATGATCAACAACAACCTGGGCAGCTGCAGCAGAGTCCCGTGTCCGGCCTGGGCTCTCTCTCCACCGCGGTGCCTGGTCTGCAAGGCCCCGAGGCGACCGCGCTGCAGTACAACAAGATCAAGAATTCAATCTGcaaATCTGTACAATCAAAAGTGGACAGCATTTTGCAAGATGTTGAGAAGTTTACAGATATTGAAAAACTCTACCTCTACCTTAAGTTGCCTTCTGGTCCTAGCAGTGGAAATGACAAAAGAACTGAAAATCAGAGGGGGTCTACAAGTCCTGCAACATGTGACCAGAATTCCACATCGTCCAGCCGGACCCAACAGATGTATGCTTTCAACTGGATCAGAAATCACTTAGAGGAGCATCCTGAGACCTCACTGCCAAAACAAGAGGTGTATGATGAGTACAAGAGCTATTGTGACAATCTTGGCTACCATCCTCTAAGTGCTGCTGATTTTGGAAAGATTATGAAAAATGTCTTTCCGAACATGAAGGCACGCCGCCTTGGAATGCGAGGAAAATCTAAATACTGTTATAGTGGACTGAGGAAGAAAGCCTTTGTGCATATGCCATCTTTGCCCAACCTGGACCTGCATAAATCAGGGGATGGGTGTGAGCTGTTGGAGCCAGCTGCTCAGTCTCCCAGTGCTGAAGATGAGATGCGTTCTGCAGCCTGTGGCCTAGTCTGTGAATGGGCCCAGAAAGTCCTGAGCCGTCAGTTTGACAGTGTGGAGGAGTTGGCACGATTTCTGCTCAACAGCCATTATATTGGCACCAAGTCCATGGCTGCCCTAACTGTTATGACTGGGACCCCAACAGGC
>XM_007244353.3
gacatACAGTTATTGCAACAATTTATGGAACTATATGCGTCTAAAAAGGTCTTTCAAAACAAAAATGACAATTATCTACACAAGTTGCACATGTGAATCGGTCTGACCGATGCATTGTAAAGAACCGATTCGCAGTGAGTCGTTCACGAGTCGGACATAGCTACTGCTTtggccgcagcagcagcagcagcagcgtccGTGGCGGCTGCCGCTGCAGCACGACGGTTGCTTTTCTGTCCACCGCGTTCCAGCAGGCTCGCGCTCGCGCTGCGGGTTTAGTGCAGTAGGGAGGAGCGCGGTCTCGGCTCATGCTCCATCCGGCTGCTCGGCTGAAGGAGAGGGTAACTGGTCGCGGTCCGCCGCCGCTATGCGCACCACCcggagagctgctgctgctcctctcTGAGATGAGGCCTACATGTTAAAGCTCGCTCCCCCTCCtgctcctccaccaccaccacctcctcctccttcccccGCGAGAAATCTCACCGTGATGGCTGATGATCAACAACAACCTGGGCAGCTGCAGCAGAGTCCCGTGTCCGGCCTGGGCTCTCTCTCCACCGCGGTGCCTGGTCTGCAAGGCCCCGAGGCGACCGCGCTGCAGTACAACAAGATCAAGAATTCAATCTGcaaATCTGTACAATCAAAAGTGGACAGCATTTTGCAAGATGTTGAGAAGTTTACAGATATTGAAAAACTCTACCTCTACCTTAAGTTGCCTTCTGGTCCTAGCAGTGGAAATGACAAAAGAACTGAAAATCAGAGGGGGTCTACAAGTCCTGCAACATGTGACCAGAATTCCACATCGTCCAGCCGGACCCAACAGATGTATGCTTTCAACTGGATCAGAAATCACTTAGAGGAGCATCCTGAGACCTCACTGCCAAAACAAGAGGTGTATGATGAGTACAAGAGCTATTGTGACAATCTTGGCTACCATCCTCTAAGTGCTGCTGATTTTGGAAAGATTATGAAAAATGTCTTTCCGAACATGAAGGCACGCCGCCTTGGAATGCGAGGAAAATCTAAATACTGTTATAGTGGACTGAGGAAGAAAGCCTTTGTGCATATGCCATCTTTGCCCAACCTGGACCTGCATAAATCAGGGGATGGGTGTGAGCTGTTGGAGCCAGCTGCTCAGTCTCCCAGTGCTGAAGATGAGATGCGTTCTGCAGCCTGTGGCCTAGTCTGTGAATGGGCCCAGAAAGTCCTGAGCCGTCAGTTTGACAGTGTGGAGGAGTTGGCACGATTTCTGCTCAACAGCCATTATATTGGCACCAAGTCCATGGCTGCCCTAACTGTTATGACTGGGACCCCAACAGgtgtgaaaacgcccacTCCTGCATCTGCATTTGTGCCTACTGGTGAGGCCAATGCTTTCCAGCCCCAAGTGAAGACTCTCCCTTCACCCTCGGTTGATGCCAAGCAGCAGCTACAGCGAAAGATCCAGAAGAAACAGCAGGAGCAGAAACTCACATCTCCACTGCCCAGTGATGCCCAAGCTCGTAGAGCTGAAGCAGGCACACCAGGCCCTGGTTCCGGTATCACATCTGGAAGTCCTGCTTTGTTGTCCCCACAGCCCACGATAGGAATTGTAGTAGCGGCAGTGCCAAGTCCCATCACGGTGCAAAGGAATCGACAGCTGATGACCTCCCCAAGTCCAGTGGCAGCAGCTGAAGGGAAAGTCCTACCAGTGAATTTCCAAGTGGTCACACAGCCTGTTAAGCAGTCCCCTAAAACTCCTCAGAATGTTCCTGCCAGTCCTGTTGGTGACAGGCTAGCCAGACACCGATACGCCCAGATCCTACCTAAACCCTCTGCCACAAGCGCCATCACTCTTCGATCACCCCCGACACTTCTCATCACTCACAACAGCCCCATCAAAACAGTGATGCCCACTCAGCACGTCAGCTCAGTGAATGTTGTCAAGATGACGGCTATATCATTAACACCTAACAgtagcagtggcagcagcacaCCAACACCCTTACGACCTGCCTCAGCTGGTGTAAGTAGCACTCTTTCCCATGAAGAGCCTAGCCAAAACCAGCAATCTCAGAATGGCAGCTCAGCCACTCTTCAGTCAGCTACAGCTGGAAGAGTTTGCCACCCTGCCACCACCATGATTTCCTCCACTACTGAAGTCAAAATGATTTGTGAAGCTACGAATGACAGTAACTTGTCTGCTGGTGTTGAAAAGCAGAGTACCGCACCCGGGACTATCACTGGGCTAAAGAACGAGAGGGCCACTAAATTTAGGGCTTCCAGTGAACCTTCTCTTCTTGTAAAGGCATCCCCAGTGCCTGAACGAGTCAGTAGGGCCAAAAGTGACTCTGCAACGCCTCCCAGTACAATCATAGGGGCAGCTGCCCCCTGCAGCAATAACAGCAGTGAAAGTACTTTGTATTTGACCGTAATGAATCAGAATGCAGATGTTGGATTGTCAACCAATGGTGCGTTTTCCCCCTCTGGCCAGTCACCAAAAAGTGCTGGTCTTGGTCCAAAAAGTCCTAGAAAGCGCTCTGCTTCTGTTTTTGAGACCCATGCAATTCCTGTTAAGAGGGTGTTTATATCTCAGCAACCTTTGGATGCCAGCAACCATCCTAAACCTGGTCTTATAATCGCTGCAAAGAAGATACAAAGGCCAGGAACTCCTGCAAGACCAGAAAGTGCTCCATGCAAAGTGACACTAAAACAGAGTAACTCCCTACCAACACAAATTTTAGCCCTTTCAGATACACCCATTGAAAACACCTCTCAGACTATTGTGACTCCTCAGAGCTCTTCACAGTCCGAGCACGGGGACACCTCTGCTGGAATTAGCCCTGCTGATATAGTCTCTTGTAATAGCACAGCATCTGATCAAGCTTTATTGCAACAAATTGTGAGCCACCAAGTCGCCACTGCCATTTCTCAGGAGGCATCTGCTGTGAGTGAGCTAAAGAGTTCCTTACAGGACTATTCTCTACAGCTACAGGCAGAACAAAAGCAGGTAACAGCTAGCCATCTTCCATTGATAGCCCAGACACCTGAAGCATCTACTCAGTTGACCCTCCAGCAGGATATTGTTGACTTTGATGGAGCTCAAGCGAGCATGGACTATTTCCCTTTTAATGATGATGACATGACTCAAGATAGTATAGTGGAAGAGCTGGTGCAGATGGAGGAGCAAATGAAGCTGAATAGCAGTCTGCAGCCATATCTTAGTTCTTTAGATATACCTTTACAAGGCCAGTCAGTTCCTCAAAGCACTATTCTTTCTCCCCACCAGACAGGTACGCAGTTCTACCACTCTGCACATAGCAGCACCACACCAGTCCACACTCCTACACCCACACCAACTCCGACACCAACCCCAACTCCAACCCCGACCTCGGAAATGTTGCCAGGTGGGCACAGTATAACAAGAGAGAGTCCGTGTTCTAGAATGGCTCCTATTACCCCAGTTGATGGTATTTTAGGTGGTCGACATACACCTATAAGCACTCCATTGTCCAACTGTAGTAGTAGTGTTCCACCAAGTCCAGTTGAGTGCCGCAATCCCTTTGCATTTACTCCTATTAATTCCAACATACCTGGTTACCATGATGGCAGTGTAGTATCTAGTAGCCCAGTTAAACCCATGCAGAGGCCCATGGCCACTCATCCAGACAAGGCTAAAATGGATTGGATCAACAATCGATATAACAGCACCTCAAGTTCCCCATCAATTTCAAACACGAATGCCATTAGCATCCTTCCTAGCTATCAGGATCTGGTTGAGGACCACTTCCGTAAACCCCACGCTTTTGCCATACCAGGGCAGTCATTTCAGTCCCAGTCAAGACACCAGGATGGACATTTGGGCAGATTGACAACTGTGTCACCTGTTCAGCAAGGCCAGCAAACAGTTGAAAACAAGCAGGAAAGCTTTGCGGTCCCAGCACCACTAGACAACAAAACAACATCTGGGAATGGAGGTGGAACTTTTAGGTGCCGTAGTGTCAGTCCTGCAGTACGGCAGCGCAATCTTAGTGGCACCACAGGGCAGAATAATCCTGCGCCAAGATCTGTTGTTTCACCTTTCAATTCCCCTTTGACCGCTGAGGTTCTTAGCATTCTCTCCAACAACCAGTCAGTGGTAAATGCCAACAGCATGGCCCAAAGGAGCCAGTCAGTACCGTTGAGCATCATGATGCAGTCTGAGATGTTGCCAATTGGCCACCAGGGCCAGCCGAGCAACAGTGCCAAAATCACCAGTGTGCTCCTCAGCAAGATGGATGCAGACGGGGACGACACAGTGCGTGGGTTGGGTGTCAACAACTTGCCTTCCAATTACACAGCGCGGATGAACCTCACCCAAATCCTGGAAACTACGCAGGCCTTTCCTGGAGGCACAGCccatcaaacacaacagataCCCGTCTGCTCAAGCCCTTCACCATTCGACTTCCAGAAGCCTGGTTTCCTTCTAACCACTGGGGGTGAACAGATTGCTTTCACCAGTGAGGCCCAAGCACAATCAGGCTCTACGCTGCAACAGCAAGAGCAACAGCTCCAACTACAGGATCAACAGCTGGAACTGCAAGATCAACAACTGTTGCAAGATTCACAGTTGCAACTCCAGGAACAAACGCTGCAGCTTCAAGATCCACAGTTGCAACTCCAGGAGCAAACGCTGCAACTGCAGGACCAACAGTTGCATCTCCAGGACCAACAGCTGGAATTACAAGACCAACAGTTGCAACTGCAGGACCAACAGTTGCAACTACAGGACCAACAACAGCTACAAGATGATCCGAACCTCAGTCAACAGCAACTGCTGCCTCAAACCTCACAACAGGATGAGgagcaacagcagcaggagcagctgGACTTCAATAGCACTGTCAAGGATCTATTGGGGGAGGATGGACTCAACCCCAGCTCGCAGCTGGTTGGGCAGGTGGCATCAGAACTCAGCGCAGTCGCGTCAGACTTCTCCAGTGAAATCCGTTTGACCTCTGATCTTTCCGGTAGCATCAACGACCTGAACACTTTAGATCCCAATCTTCTGTTTGACCCGAGTCAGCAACAGGACCAATATGAAGACACCACACTGGAAGAGCTGAAGAACGACCCAATATTTCAGCAGATATGCAGCGACACTGTGAACTCTGCTGGATTTGACTGGTTGGAGAACAAAGACCAGCCAACAGTAGAAATGTTGGGTTAGGTTTCTTTTTCTATTCCTTTACTGTCATGGTTATTGCTGTTCGTcactatttatgtttttttcattgttcatttctgttttttatgactctctttatctcttttatatattttaaaaaatgtgatttaagttGTGTCACTGCAGCAACAATCTGGATCTATCAGTCAGTCCAGAGAGAAGTGCCAGCCTGACCTGAAGTGATCTTTACAGGCTTGCATCCCCCCCCCTGTTGTTACAGCCCATCTCGCTCTCCTCTCACTGAAGTTGATTTAAAGCATTTGGCAGCAATCAggcatttcttttctttatggATCTATAACATAACGTAGGACTTATGTAGTAAGGGCTACACAATATTGATAAACAGCTGTCATtgcaatacattttctttttgcaatatatattgcaatattaaacagtACAACTTTCATTTTGAAAAGAGCTCAgcagaagtcagtgatccatTTCATCCAACATTTCATTATATTAGTTATGCACTTCATGCATTGAAGATtggacaaataaaataatttgaaaagaTATGATCTATATCCAAGTCATGGAAAAGTAGAACTTCTTTTGTTAGTGAATGTAAACATTTTTGTCTCAAGCATTTATTTGACATTTCACGCCCTGCAATGTGACTACTGTGCATGTGCACATTGTGATGATGatgctgtaaaaatatattgtgcagccctaatttggATATTATTAACATATCCACAATTTTATTCACATATTTTTAACTTACTTCATTAGTCCAACTCAACATCCTGAATATTCCACAAATCCATGATTCCATAAATCAGTTAATGATGTGGAatgcaatattttaataatggacAATTAAGTTTTGATAAATTGCATAGGCTAAGAGTTTTGTCTTTGCATATAAGCTAATGAGTCAGACTGCTGAGGAATTCGCTTCACTTTCATTGTCACGAGGGACATTTATGATCACTTCTTCTTATTTGAACTAAATTGTCAGTCAAAGTAACATGCAATTTTAGGTGCTAATAGGTGCTGAATAAAACTCATTGGCATCTGCCGAAACACTTTTCGGTTATTGCTATGTTTTGCCTAATAAATAGTcagttagtttatttaataataggACATATTACTCGTACTGTTAAATAAAAGGATGACTGAGAGGAGTCCGGTCTTTGATATAactacacttttttaaaaaagtgaaatattacATGAGGGAGTCTGGTCTGCCTTATTTCCAAAGTCCAAGGCCTTATGTCATCTTTAGCAAGGCTTTAATGTATGGAATTTGAGGATTTTTAAACATCTTGCTGCACTTCAGACAGAGCTTGGCTGTTTGTCAttgtgaattattgtttttgaTTTCCAAACACATTCCTTTAAATAATGCTTGCAAACTGTTGTCTCCACCATTTCCCCCATAGCTCTTCTCCACATGATTACGGCAGTAGACAGTAGTGAAATGGTATGGTTAAGAGTAGATATTCCATCTAAGGCTTGTGATCAAAAGTCCACCCTGGAGTGGTTGAGGGTTTAATGTGTTTCAGCCTTAAAATCCATACCAAAGAGAACTGGTAAAGAACAATACGTGATTGAGATCTGCTATCGCTGTCTCCATCTCCAAGTAACCATCATcactaaattgatctggttGAATTTATTGGTGAATTGAACAGGGTTTTATGGTGCTCGAGTTCCTGGTGGGCTGATATttgtgtatagtatgtatatgGAAGACGTATCTGATGTACAGTTAATTATGGGTGGGAAGCATGTTGTCCAACATTACTTAATGAATTCATTAAAACTAAGGCTATTTGTAGTCATTCTATTAACACcacctttgtttaaaaaaaaagacatagtcaagattttaaaaaatccattttattaaatacactgTACGGTGATTTAGATAGATCTGAAAGCCcttgaggggaaaaaaagttaagaaatcaTAATGAATCTATAGTCAGCACGATATGCTGTGTGTTATGTTTTTGGCTTTATGTGTTGTGCTAGTAATGCTGTCTGTTTGGTCTCTAGCTTGCTGATGTGCCATTTTCCTTAAAAGAGTATATTGGTCTCTGCTTTGCAGATGTGATGTGTACATTGAGAGAGGAAAAAATAGCATGGTTTATATGAAAAAAGATGAATAATGATAtatacaatgttcattttattgtgACAGTCAAATGTGTTGCGCAGAGAACCCTGGAGCGGCAGGCACTGGAATTTCAATGGTTCATGATTCAGCAAACTTCAGAAAGTTCACTTTATTGCACTAAAGAGTTTCCTTTTTTGTAAACCATGACTTTGTCAGAGATTCAAAGGACAAAGGGGAAGCAATTGAAGCTGGtaaaaagctgatttttttttgaaggTAAATTACAAAAGGGGAATTACATATGACATGTCAGAAAATTACAATGAATTATTGCCTTGTGTAGCAATGTGCACTAATCTCAATGAGATACACATTTTACTCATTCTCATCCATGAGAATAAGAAAGATAAAAGCAAACAAAATTTAAGATAACATTattaaaagtgaataaaaagaGAACATGCTTCACTATGTTATTCAATGATTGTATGTGCGCATGTATGTTAAACTATCTATTGTAGTATACTTTGTGACCACTCCCTCCGCAAAAAAACTGAGGGCTGGTTGTGTTGACCAGATAGACGAGAAAAAATAATGTAGTTCTTCGGAATAAAAGCTATATGTGTGATGTTTGCTAAGTTAATATTGTTCTGTATGTTTTAGTTTATGAATATGTTCCCTTTTTCAGTACATGCatcttttgttttgcttttgttttccttttttattttttatgaaaaaaaaatgcctttgtgaagaaaactgtaaatatgtttttctatgTTCCGGCATTTATCGAGGCACtgattatttacttttttatgttggGAAGGAAAGATCTAATCCTTACTTTTTTGATACACAGAAGATTCATCAAACAGTAAGTCTAATGCTGTATTTCAGACTGGTCTGGTAGATACAAATGTGTttattctttctgtctctttgaAACAGTAGGACTGAACCCTTCTCTGTGCTGTCGTCTGGTGTACTGCTCAATGTACAGTAGCTTCTTAATATTGCAGAAGCGTTTTAGcgatgtttctttctttttttcaatggAAAGTACTCACAGGTgagatttttttaagtggttttaaaagccaataaacatttttaaataa

Function

symbol description
rfx7 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: DNA-binding protein RFX7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102047 False 1152 TUCP 0.53 8 22755152 22772561
XM_007244353.3 True 8428 mRNA 0.44 11 22754973 22780959

Neighbor

gene id symbol gene type direction distance location
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding upstream 88164 22637160 ~ 22666809 (+)
LOC103021604 LOC103021604,LOC108428402 coding upstream 783737 21956572 ~ 21971236 (+)
LOC103022337 yaf2,LOC108428404,LOC103358851 coding upstream 799834 21948555 ~ 21955139 (+)
LOC103047463 prickle1,LOC107726281,LOC107695002,LOC107741965 coding upstream 842678 21865975 ~ 21912295 (+)
LOC103046961 LOC107694983 coding upstream 1009009 21644638 ~ 21745964 (+)
rsl24d1 rsl24d1,LOC107694994 coding downstream 40158 22821117 ~ 22824416 (+)
fam96a fam96a,LOC107673635 coding downstream 637707 23418666 ~ 23425305 (+)
saal1 NA coding downstream 898258 23679217 ~ 23687396 (+)
tph1 tph1,tph1a,LOC107673292,LOC107564603,LOC107670227 coding downstream 922966 23703925 ~ 23710875 (+)
sergef NA coding downstream 931571 23712530 ~ 23742791 (+)
G75734 NA non-coding upstream 2974 22751535 ~ 22751999 (+)
G75689 LOC103026897,LOC108428397 non-coding upstream 121564 22630194 ~ 22633409 (+)
G75664 NA non-coding upstream 315648 22439030 ~ 22439325 (+)
G75627 NA non-coding upstream 722503 22032159 ~ 22032470 (+)
G75577 NA non-coding upstream 1003725 21750926 ~ 21751248 (+)
G75760 NA non-coding downstream 120319 22901278 ~ 22902077 (+)
G75795 NA non-coding downstream 169721 22950680 ~ 22950899 (+)
G75807 NA non-coding downstream 244316 23025275 ~ 23081671 (+)
G75874 NA non-coding downstream 433444 23214403 ~ 23214749 (+)
G75881 NA non-coding downstream 484971 23265930 ~ 23266319 (+)
mov10l1 NA other upstream 1490197 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 1658067 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 1729845 21023256 ~ 21025128 (+)
LOC103028745 NA other upstream 2547018 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 3217356 19527212 ~ 19537617 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 776 22781735 ~ 22815522 (+)
G75938 LOC105900730,LOC105912833 other downstream 706571 23487530 ~ 23487870 (+)
G75974 NA other downstream 1134832 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 1251133 24032092 ~ 24037861 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other downstream 1272102 24053061 ~ 24082844 (+)

Expression


Co-expression Network