LOC103033738 (LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877)


Basic Information

Item Value
gene id LOC103033738
gene name LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23324577 ~ 23366216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102264
ATgctattggtttatacacacCAGTTGCACTGATTTACCAATTACTTTCTCCCAGTTTACAgcaatacacacattttttaagaTATCCTGTTGTGAACTGTATAGTTAAGTGTTGTTCAGTATTGATGTCACAGTGCGTTGGTGTAGgtgtgcagtagagtgttgagGTCATTTTTGTATGTAAGATGTTTGCTACTAGATTTCTTCTCCTTTTTGTCCTTCAGGAAGCGTCAGTGTTTCATGCtaaataaactttattcagATTAAATCATTCCCTccaaaaaacagcacaaaatcactaaaatgaCTGTACTGTTGTTGACGGTACAGACAGTAGAATTTAAGTTAATCACCACAGTGTTAATTCCTTGTTGTGAATAGCACACACAAGTGCAGTCAAgcacacaaagaaaaagagTTCAGCTTCAGCATTTTAGTCCTGTATTTGCGTTTTCTCATGTctgcattttcttttctctattCTCATGTTTGGGCATTTGTGCATTGCAGTTTTG
>XM_007231195.3
ccagttGGTTTACTGTGAGGAAGAGGAGACCCCGGTCTGTGTCTCCGGGTTTCTCTCCTGATATTCCCCTGTTTCACAGCGGAAATGGGAGCGAGACACTTCACCGTGTTTGTGCTGAATACCGCGGTCTTCGTGCACGTGTCCTTGCAGGGGCAGCACCAGAGGCGTTTGTATAAGGACCTGATGAGGAACTATAATCCCTTGGAGAGACCCGTCTTTAACGACTCCCAGTCTCTAACTGTGCACTTCAGCTTCAGCCTGATGCAGATCATGGATGTGGATGAAAAGAATCAAGTTCTGACCACTAACATCTGGCTACAGCTGtacTGGGTGGATTATTACCTGCAGTGGAATGTAACAGACTATCCTGGTGTGGCCAATGTGCGATTTCCTGATAATCAAATCTGGAGGCCAGATATTCTGCTCTACAACAGTGCTGATGAGAGGTTTGATGCTACTTTCCATACCAACGTGCTGGTCAACTCCTCAGGCTACTGCCAGTATCTACCACCAGGAATCTTCAAAAGCACCTGCTACATAGATGTTCGCTGGTTTCCCTTCGATGTGCAGCGGTGTGATCTGAAGTTTGGCTCGTGGACGTATGGTGGCTGGTCTCTGGATTTGCAGATGATGGATGCAGATATCACAGGATACATTGCCAATGGGGAGTGGGACCTAGTGGaGGTTCCTGGTCGACGGAATGAGAAGTTTTATGACTGCTGTAAGGAGCCGTATCCTGATGTTACCTTCACAGTGGTGATGAGAAGGAGAACCCTGTACTACGGACTGAACCTCCTCATCCCCTGTGTGCTCATCTCCACCCTCGCACTCTTAGTGTTCCTGCTGCCCGCTGACTCAGGGGAAAAGATTTCACtggGAATCACTGTGCTGCTGTCTCTGACTGTCTTTATGCTCCTGGTGGCTGAAATCATGCCAGCAACATCAGACTCAGTGCCACTGATCGctcAGTACTTTGCCACCACAATGGTGATCGTAGGGCTTTCAGTCATTGCTACAGTGCTCGTGCTACAGTACCATCACCATGACCCAGACGGTGGCAAGATGCCAAAATGGACTcgtgtgctgctgctgaactgGTGTGCGTGGTTCCTGCGCATGCGGAGGCCCGGCGAGGAGCGAGTCCGCTCAGCCTGCCACAACAAGCAGCTGCACAGGGGCAGCGTGTCCAGCGTGGAGTTGTCCGTCAGCCAGGGGGCGCTGCAGCCCAACAACAGCAACATGCTCTACATCGGCTTCAGGGGCATGGAAGGTGTCCACTACACCACCTCACCCGACTCCGGGGTGCTCTGCGGCCGCATCATGGGAGGCAGTGAGGAGGACGTGCTGTTGCCGGGAGCAACAGTGTCATCGTATCAAGGCAGGGTTGGAGTTGGAGGCAGAGTCACCGGAGGAGTTGTGGGAGGAGCCACAGAGACTGAATTAGCCAAGATTCTGGAGGAACTGAGGTACATTGCGAGGAGATTCCGGAACCAGGATGAAGACGAGAGCGTGTGTAACGAGTGGAAGTTTGCTGCAGCTGTCATCGATCGTCTCTGTCTGATGGCCTTCTCCATCTTCACCATCCTCTGCACTTTTGGCATTCTTATGTCTGCACCCAACTTTGTGGAGGCCATCTCTAAAGACTTCTTTAATTAGAACTGAAGTGTTGTAAAGACTCGCAGTGGAACGATCTTAAAACCACAGCACAGCAACCCAACTTTCTTCAACAAACCACTAACAATTACCAATGACCTGATGTTGGCAATTGTTTTAGATGAAACAGTGGCTGACAGTGGCTTGCATTTTAAGGCAGTGTAAAATTGCTAAATGTTCTCTTAACTCATAAGAGCCCGGACCCAGtacttcattcatttatttattttaattttttatctatttattttattttattttatttttttatttatttctttttctttttgtatttatttatttacaaaattacaTAATCAGATAAATTAAGCAGTTTAATTGAGCAGCTCATTAGTGTTTATTCTTGCTGTGACAACATGGTCACATGACTTCTGTAAATAGTTTAGTAATATGgagtatttttgttgtatttccAGAAATGGGGTCAGAACtggtaatatactgtatgtaatgcaTCACATATTATTAGAGCATTTAGATTGTGTAATATCTTGGAGCATACCTTTATAATGAGCTGTTTATTTCTCGAGCGCTAATCGAGCACatctacattctgtaaataaggtcacaTGATCACACATTCACATACTGTCCCGTGATGcactcaggatgttcagtatatgtcGCTTAGGGACTTCTTTAGTTAAACTGAATGAGTGCTGTAAAAAACTGTAGGGAAGCTGTAAAGGTCTGTGATACACGTGTTACCTTGGGCTCTTTTTGGGTTAAGGACACGTAGCAGAAAGGCAGAAAAATTCATATGTATATTTTGATGATGTTGAGATAAAGCACTTCATTAAGcatagattattaaaaaaaattgtttgcaAAAGCAGGTGCTATTCATTATCTGGTTTTGCAAATTACCTCTTCGTTTATCATCTAATAAGTCCAGATATATGGTACAAATAGCAGTGAAATGCATTGATGTCTGCCTGATcacataaaacaaatacaaaatataaaactagatacaaatatgtgaaatagaataaaatgaatTGACAACAAATagttgcaaaaataaatataaatactgttCAAACAACAGAACgaataaactgtaaaatttatttCAGCTTCTCCTCAACCATGGTCCACAATATAGTTTCATGCAAGCAAGCTGCACAGAGACAGCCATCTTCAagtaattttacatatttttttaaatatttgaagtCACAAATTTTGAGCTACTGTTTTggtttaaatttaatatataatatggaaTCAATTCTGTATGGAATTTAGCAGCTCCCTCAATCGGTGTCAATGAATGGCTGATATAGTTGAAGGACGATCTGCGATTATGATGTACTATTTAAACTTTTAGGACCAAACCCATATAAAACAGCATATTATCAGTctattgcaaaaaaaagttgcacaagctGTTCTAGTGCATTACTAGCATTGATTGCTAGGCAGGTAGCTAACATAAACATACCCACATATTCTGTAGCTAGCGTACCTGAAGCTAAATTACACCATTTGTACACAAAGACACTCAGGCCTAATATATACAATGTTTATGGTCACTTCTTTCCCTTCTTTCTGTTCTAGCTTCCTGATGGACAACTCCATTGGGTTATTATGGGTAAGTTGGGGTATTGGAACTAGTGGGAGGTGCCCCCTTAAGGGAGATTCCAAAAACACTGTTGATGTACTTTCCTGCACTGACCGTCACAGAATTTAAACAGGCGCtcacacagtttgttacattcaattcataaccagtAATTTCCTGTGGCCCCAGGCCAGATTGGGGTCCTAGGcttttgattggtttgcttgccttgttgcaacgggCCTGATTTAGAATCAGATGACAAATatcttaaatgttattttatatttaatattacctataaaacagtgtatatgtaaacattataaacaacattatatatattttatcatcaTTACACAGCACTTTGAGGGCAATAAGAgacaattaaattatatacaatttatcagttttctgtttattatttgaaATCTGTGGATGTTGTAAAGAGCctgtattttataataatttgatACTGATTAATAAGGAATCAAATGTTTCAATTATTAATAACACTGAAAGTATAAAATGGTGGTGTATTTTAGATGCAAAGTACACTGAGAAAGGAACTGAGTTTAATGTGTAAGTGCTAATGCTGGATGTATGAAGAAGAGTCATTGCAGTTCTATAGAAAGGTTTTAATTGTTCCATAAAAGTTACAGTAATTTTACTTGAGTAGGAATTTTTGTTTACTGTCTTTAAAACAGTCCATgctattggtttatacacacCAGTTGCACTGATTTACCAATTACTTTCTCCCAGTTTACAgcaatacacacattttttaagaTATCCTGTTGTGAACTGTATAGTTAAGTGTTGTTCAGTATTGATGTCACAGTGCGTTGGTGTAGgtgtgcagtagagtgttgagGTCATTTTTGTATGTAAGATGTTTGCTACTAGATTTCTTCTCCTTTTTGTCCTTCAGGAAGCGTCAGTGTTTCATGCtaaataaactttattcagATTAAATCATTCCCTccaaaaaacagcacaaaatcactaaaatgaCTGTACTGTTGTTGACGGTACAGACAGTAGAATTTAAGTTAATCACCACAGTGTTAATTCCTTGTTGTGAATAGCACACACAAGTGCAGTCAAgcacacaaagaaaaagagTTCAGCTTCAGCATTTTAGTCCTGTATTTGCGTTTTCTCATGTctgcattttcttttctctattCTCATGTTTGGGCATTTGTGCATTGCAGTTTTGTgaacactttacaaataaatgtatttttataaa

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-7-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04809 CHRNA7; nicotinic acetylcholine receptor alpha-7

RNA

RNA id representative length rna type GC content exon number start site end site
TU102264 False 515 lncRNA 0.36 1 23324610 23325124
XM_007231195.3 True 4499 mRNA 0.40 10 23324577 23366216

Neighbor

gene id symbol gene type direction distance location
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 178047 23025246 ~ 23146530 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding downstream 305864 22969371 ~ 23018713 (-)
LOC103029587 LOC108428387,LOC108274707 coding downstream 374555 22832764 ~ 22950022 (-)
LOC103030430 NA coding downstream 493784 22824573 ~ 22830793 (-)
LOC103028433 LOC108428361 coding downstream 590478 22720512 ~ 22734099 (-)
spg11 spg11 coding upstream 4407 23370623 ~ 23418145 (-)
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding upstream 381732 23747948 ~ 23772669 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding upstream 549575 23915791 ~ 23922222 (-)
LOC103036104 LOC108432677,LOC108274966 coding upstream 559052 23925268 ~ 23974335 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 671041 24037257 ~ 24043153 (-)
G75883 NA non-coding downstream 49171 23275044 ~ 23275406 (-)
G75875 NA non-coding downstream 109761 23214403 ~ 23214816 (-)
G75837 NA non-coding downstream 216691 23107379 ~ 23107886 (-)
G75824 NA non-coding downstream 328023 22996219 ~ 22996554 (-)
G75796 NA non-coding downstream 363011 22961282 ~ 22961566 (-)
G75928 fam96a,LOC107673635 non-coding upstream 52495 23418711 ~ 23425345 (-)
G75937 NA non-coding upstream 120405 23486621 ~ 23486960 (-)
G75939 NA non-coding upstream 121315 23487531 ~ 23487858 (-)
G75989 NA non-coding upstream 312989 23679205 ~ 23687390 (-)
G76015 NA non-coding upstream 435329 23801545 ~ 23860428 (-)
LOC103024007 LOC108428399 other downstream 750564 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2051560 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2253331 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 2576369 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 3224327 20084428 ~ 20100250 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 460998 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 874682 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 1424976 24791192 ~ 24798616 (-)
G76377 NA other upstream 1548082 24914298 ~ 24920365 (-)
G76424 NA other upstream 1817993 25184209 ~ 25184469 (-)

Expression


Co-expression Network