LOC103042310 (ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968)


Basic Information

Item Value
gene id LOC103042310
gene name ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23827214 ~ 23833068 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102417
CTCCAGAAGCAAATTCCCTGTGCCCCTCCCATCACTCAGCCTGAGCTCCTGAATTCCTGACACTGCTTCTTCAGTCACAGGCTCCAACTCAGCTCCCTGCTATTTCTGTGTGGGACACTTTTGTTTCTGATCTTCTGCAGCTTGGATAAAGCTCTAAAATGTTGTGGATGCGCCTGGCGTTGCTCAGCTGTGTGACTGTGCTGTTTGTCCTCACCTTGTCCCATGAGGGTAACGGCGCATCTGTGTCTGATGGGAAGGCAGACAAGAAAGCAGCAAGCCCACAAGGCGTCGCGGCAGGAGGGCAGTGAAATCGCAGGATGAGATCAATGCTGAGCAGAGGCAGAGACTGGCAGCTGATGAAAGAAAGAGGGAATATCATGAGGAGCAGAGGAATGAGTTCGAGAATTATGCAGAGGAAGAGCATGATGAGCAAGATGAGAGAACCCGGGAGAAGACAGAGCAGTGGAGAGAGTTCCACTACGACGGCCTCGACCCTTCTTACGAATACAACCGCCACACCATTTAAAGGTGACCAGTGGAGGTTTTTGTCCATCAGGGGAGGAGAAAGGTGCCAATGAACCAAATAACGCTCCCTGCCAGCTCTGTAGCCTACTTACTAAATGAGCTCTCCCTAGATTTACTGACCAAAATCTAGAGCACCCTCTGCTGGacaaaaactcttaaaaaacttTCTCTTAAAGCAGCAGCTGTTTCTGGTGGGGGGTGCAGTTAGACCAACAGTTAAAGGTGCTAAGCTCTTCTCTGTGAACAAAAGGTCTTGTACCAGATTTGTGACTGGGCAAGGAAGgaaatataatatttagtaCTTTGATTATTTTCTGCACCATTGTTCTGAATGCTAAATGCGTCTGTAATGAGTGTGTTACATAGCACATCTATCAAAACAGTACTAGTGCTAAAGTTCAGCATGCTTATTATACAAAGTGCACAACACATAGGGTATATTAATATTCACAGCTGATGATACTGTATAcatgtgctttattttattttaatacatactgGAAAGATGTAATACATGTATGGAAGATTTCATGCATTGTGTGATAAAGGGGTTTTAAAGTTGGTATGATGTATAAATTTGTAATGAGTTCAGTATGAGCtactacaacaacaaaaatatgatTACGCTTTCACCAGTTTAGTTCAAACTGTAGTCATATACAATCTGTACATCTGTGTATTTACAAACAGTAAAACTGTCCTACTAATGCAAGTATACAGGTAATACATGTAGTTTAATATGCAGATTTGTTGACTTGTAATGGATTCAACAGAATGCATTCTGTAATGTAAAAATTCTAaacc
>XM_007235170.3
TTGCTACAGTTTCTGTACTTGCTGAGGGTCCACCCTCCAGAAGCAAATTCCCTGTGCCCCTCCCATCACTCAGCCTGAGCTCCTGAATTCCTGACACTGCTTCTTCAGTCACAGGCTCCAACTCAGCTCCCTGCTATTTCTGTGTGGGACACTTTTGTTTCTGATCTTCTGCAGCTTGGATAAAGCTCTAAAATGTTGTGGATGCGCCTGGCGTTGCTCAGCTGTGTGACTGTGCTGTTTGTCCTCACCTTGTCCCATGAGGGTAACGGCGCATCTGTGTCTGATGGGAAGGCAGACAAGAAAGCAGCAAGCCCACAAGGTGGCTTGAGGGGAGTTTTCATGCAAGAGAGTGATGCCAGCAACTTTTTCAGGCGTCGCGGCAGGAGGGCAGTGAAATCGCAGGATGAGATCAATGCTGAGCAGAGGCAGAGACTGGCAGCTGATGAAAGAAAGAGGGAATATCATGAGGAGCAGAGGAATGAGTTCGAGAATTATGCAGAGGAAGAGCATGATGAGCAAGATGAGAGAACCCGGGAGAAGACAGAGCAGTGGAGAGAGTTCCACTACGACGGCCTCGACCCTTCTTACGAATACAACCGCCACACCATTTAAAGGTGACCAGTGGAGGTTTTTGTCCATCAGGGGAGGAGAAAGGTGCCAATGAACCAAATAACGCTCCCTGCCAGCTCTGTAGCCTACTTACTAAATGAGCTCTCCCTAGATTTACTGACCAAAATCTAGAGCACCCTCTGCTGGacaaaaactcttaaaaaacttTCTCTTAAAGCAGCAGCTGTTTCTGGTGGGGGGTGCAGTTAGACCAACAGTTAAAGGTGCTAAGCTCTTCTCTGTGAACAAAAGGTCTTGTACCAGATTTGTGACTGGGCAAGGAAGgaaatataatatttagtaCTTTGATTATTTTCTGCACCATTGTTCTGAATGCTAAATGCGTCTGTAATGAGTGTGTTACATAGCACATCTATCAAAACAGTACTAGTGCTAAAGTTCAGCATGCTTATTATACAAAGTGCACAACACATAGGGTATATTAATATTCACAGCTGATGATACTGTATAcatgtgctttattttattttaatacatactgGAAAGATGTAATACATGTATGGAAGATTTCATGCATTGTGTGATAAAGGGGTTTTAAAGTTGGTATGATGTATAAATTTGTAATGAGTTCAGTATGAGCtactacaacaacaaaaatatgatTACGCTTTCACCAGTTTAGTTCAAACTGTAGTCATATACAATCTGTACATCTGTGTATTTACAAACAGTAAAACTGTCCTACTAATGCAAGTATACAGGTAATACATGTAGTTTAATATGCAGATTTGTTGACTTGTAATGGATTCAACAGAATGCATTCTGTAATGTAAAAATTCTAaaccaaacaaataaaagtcaatatCTGATCTTAAA

Function

symbol description
ucmab Acts upstream of or within embryonic skeletal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in head and notochord. Orthologous to human UCMA (upper zone of growth plate and cartilage matrix associated).
ucma Enables BMP binding activity. Predicted to be involved in embryonic skeletal system development. Predicted to act upstream of or within negative regulation of osteoblast differentiation. Predicted to be located in aggresome and perinuclear region of cytoplasm. Predicted to be active in extracellular matrix and extracellular space.

GO:

id name namespace
GO:0048706 embryonic skeletal system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102417 False 1329 lncRNA 0.42 5 23827245 23833034
XM_007235170.3 True 1446 mRNA 0.42 5 23827214 23833068

Neighbor

gene id symbol gene type direction distance location
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding downstream 54545 23747948 ~ 23772669 (-)
spg11 spg11 coding downstream 409069 23370623 ~ 23418145 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 680684 23025246 ~ 23146530 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding downstream 808501 22969371 ~ 23018713 (-)
LOC103029587 LOC108428387,LOC108274707 coding downstream 877192 22832764 ~ 22950022 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding upstream 82723 23915791 ~ 23922222 (-)
LOC103036104 LOC108432677,LOC108274966 coding upstream 92200 23925268 ~ 23974335 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 204189 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 317357 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 324071 24157139 ~ 24180647 (-)
G75989 NA non-coding downstream 139824 23679205 ~ 23687390 (-)
G75939 NA non-coding downstream 339356 23487531 ~ 23487858 (-)
G75937 NA non-coding downstream 340254 23486621 ~ 23486960 (-)
G75928 fam96a,LOC107673635 non-coding downstream 401869 23418711 ~ 23425345 (-)
G75883 NA non-coding downstream 551808 23275044 ~ 23275406 (-)
G76020 NA non-coding upstream 4543 23837611 ~ 23839200 (-)
G76023 NA non-coding upstream 9987 23843055 ~ 23844408 (-)
G76035 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273 non-coding upstream 48746 23881814 ~ 23886172 (-)
G76040 ambra1,LOC108432675,LOC107740878,LOC107559958,LOC107569709,LOC107720791 non-coding upstream 62286 23895354 ~ 23896211 (-)
G76042 NA non-coding upstream 67574 23900642 ~ 23910505 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 460998 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1253201 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2554197 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2755968 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 3079006 20622641 ~ 20748208 (-)
deaf1 deaf1,LOC107726848 other upstream 407830 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 958124 24791192 ~ 24798616 (-)
G76377 NA other upstream 1081230 24914298 ~ 24920365 (-)
G76424 NA other upstream 1351141 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1449721 25282789 ~ 25301768 (-)

Expression


Co-expression Network