G76060 (LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429)


Basic Information

Item Value
gene id G76060
gene name LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24040374 ~ 24041616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102480
TTCCAGAATTACAATGATTTCTAGGTCCTCATTGGGCAGTGACTGGGCAGAGACCTCATAAAGTGGGCTTCCTCTCTCAATGGTGTGACTAATGATCAGTGGTGAGACCAGGAAGATGCCATTGCTCCTGAGGGGGTTTTCCACCTGGATGTCCAGCTGGCAGACTGGAATCACCTCCCCTTCTGCTGTTACTGTCCTCCGAATGACCTGCAGCTGAATGGTAGCAGAAATGATCATGCTCTTCCTCAAGTCTCCAACACGGAACATGAACGTGGGCCTGCCATTGCGTGGTGCGATGACAGCATTGCGAGAGAAGATGAGTGTCTCTGCTCGTCGATTAGCCTGAGCTGTCTTCATGAACACACAGCCCAGCATAACTGCATTGATGATGAGTCCCAGAATGTTCTGGATGATCAGAACGGTAATGGCCAGTGGGCACTCCTCAGTCACCATCCTCCCACCGAAACCGATGGTCAcCTGGACTTCGATCGAGAAGAGGAATGCTGAGGTAAAAGAGTGAATGGCAGTGACACATGGAACATGCCCACGATCATGGGGGTCACGTGGCTCCAGGTCACCGTGGGCAAATGCCAGGAGCCACCACACCATGGCAAAGAGCATCCAGGAACAGAGAAATGCTGAGGTGAAGATGAGCAGCGAATGCTGCCACTTGAGGTCGACCATTGTGGTGAAAACATCCTGGAGGAACCGA

Function

NR:

description
ATP-sensitive inward rectifier potassium channel 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102480 True 712 lncRNA 0.52 3 24040374 24041616

Neighbor

gene id symbol gene type direction distance location
prdm11 prdm11,LOC106560765 coding upstream 10731 24015475 ~ 24029643 (+)
LOC103036608 phf21ab,LOC108432679,LOC107673221,LOC108275277 coding upstream 26028 23979811 ~ 24014346 (+)
ambra1 LOC108432675,LOC107670191 coding upstream 129853 23887608 ~ 23910521 (+)
LOC103040160 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273,LOC106562601 coding upstream 154133 23880185 ~ 23886241 (+)
nox5 nox5,LOC107720789,LOC107559983,LOC107673291 coding upstream 166584 23858469 ~ 23873790 (+)
bet1l bet1l,LOC107740886,LOC107569707 coding downstream 2530 24044146 ~ 24047074 (+)
LOC103034513 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248,LOC107559970 coding downstream 6924 24048540 ~ 24050532 (+)
myo5c myo5c coding downstream 42176 24083792 ~ 24107824 (+)
LOC103032917 gnb5,LOC108432683,LOC105018176,LOC106584742 coding downstream 67589 24109205 ~ 24117294 (+)
ap4e1 ap4e1,LOC107571341 coding downstream 78892 24120508 ~ 24132034 (+)
G75988 NA non-coding upstream 62952 23977065 ~ 23977422 (+)
G75957 NA non-coding upstream 257381 23782032 ~ 23782993 (+)
G75889 NA non-coding upstream 747232 23292836 ~ 23293142 (+)
G75882 NA non-coding upstream 765361 23274570 ~ 23275013 (+)
G75881 NA non-coding upstream 774055 23265930 ~ 23266319 (+)
G76197 NA non-coding downstream 237878 24279494 ~ 24280790 (+)
G76202 NA non-coding downstream 247776 24289392 ~ 24291726 (+)
G76217 NA non-coding downstream 399469 24441085 ~ 24462559 (+)
G76219 NA non-coding downstream 412595 24454211 ~ 24456691 (+)
G76225 NA non-coding downstream 486015 24527631 ~ 24563160 (+)
LOC103038709 LOC103038709,LOC108432651 other upstream 2513 24032092 ~ 24037861 (+)
G75974 NA other upstream 122771 23915791 ~ 23917603 (+)
G75938 LOC105900730,LOC105912833 other upstream 552504 23487530 ~ 23487870 (+)
LOC103047784 LOC108428360,LOC108274708 other upstream 1224852 22781735 ~ 22815522 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other upstream 1259415 22754973 ~ 22780959 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other downstream 11445 24053061 ~ 24082844 (+)
G76192 NA other downstream 216893 24258509 ~ 24260506 (+)
LOC111193110 NA other downstream 831784 24873400 ~ 24898537 (+)
G76358 NA other downstream 905172 24946788 ~ 24948149 (+)
LOC103022391 parvb,LOC108432702 other downstream 933325 24974941 ~ 24983714 (+)

Expression


Co-expression Network