LOC103037768


Basic Information

Item Value
gene id LOC103037768
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24009970 ~ 24016230 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102504
tccagaaaaacagctaaacttCACATTTCACTACACTGTAACTCCTGCGCGGGGACCCTGCGGAGACCCCGGGCCGGGGGTCGCGTGTAGCGGCTGTGTCTCCGCGGGGCAAAGCGTGGAGGCCGCCCCGCCACCGCGGCTCCGCTGCGCAGGCGACTGGCAATTTGCCTACCTCTTTCGGAAGCCATGTTCACTGGCCACAGtggctactgagacaaactcaCCTTGTGCAGAAACGCGGTCCGCTCAGGGCGCTCCGCCCGGCTGCCTACACTCCAGCCGCGGCTTCAGCCCCCGCGCGGCGGGCGCCGGGGCTCCGGAGGAGCGGATCAGCGGCACTAGTCCCGGGCGATGTAAAGTTTATCATCGCAAACATTTATAAGGAGTCAGCTGCTTCTCTCAGCTTTGACCaccatcttttttattacaggaaATGACATGGAAAAACGGAAGAAAGCTGTGTTTATGGAGGAGCGGGGCGAGCGTGCAGAATGACTGGAAACAGAAACTGATCGTCAGTTCAGACAGAGCGAGACTCAACTCCGCCATAAAACTCAGACACGGGCTGAAACTGCTTCACACACGGGCTCAGCACAGACACCGTCACTGTTAAACTCTATTGAAAGGGGTTTGGCCCTCTTTAAGACTCTTATTCAGTCAAACTATAAACTAAGTCAATTCCAGTAATGATTCACCACAGACAGTAAACTTTAGTCTGAGGCTAATCCAGACTCACTGCACTGATCCGTATCCACACACACTGAGCCTAAAGACCAGAACACTGCCCTTTTCATTCCCAGTTTTCCCACTGTCATTTTCACCACCCCTTCTGCCCTGAGTGGCGAACATCTCACCATAACCACGATTCTCTCTGGAATCAAAAGTAATTAATCTATAGCAGTGATTCTCAAACTTTTTAGAACATGTACCACCAATGAGTTTCCAAGCTAAAATATTTACCCACCACATTATTTTGAGTAAGTGAGCTATAATATTTCTGTACTGTAGGAATAAGAAACCttaaatttaaacatatttataaacataatatattaCTTTTCTATTGTCACTTTAATGCAAACAGTTTGTACTCCCAtttctgccattttttttactttttgacatagTATATCTGacagttgttctttatattatGTCCATATTTCACGACTTGACattgaaatgctccaaaatgccttggaataaaatatttttacactttttaccccttccccctacagttgtagttTTGGAGGAATTTGTCTGATGGTGGCAACATACAGCTAGCTGATTTTCTTAACATAAACCAGGTCAAGAACCACAGTTACATGGCATCGCTCAAAGAGCCTGTTAAAGGCATCCTTATTTGTATGGGTACCATTAAAAGCAAACTGCACAAGTTGTATTTTCATGGAAGGTGCACAAAGAgggaagaaaataaagagactcTCTGCCCCTCCAGTCTCAAGATTGACATTTATCTAACTGATAATCAGGATATCTGAAAGGAGGATAAGAGGATCTGGATATTTCTAAACACTGCATACAAACAACTCAGCACAGGCTCAAATACAGGAGAGAGGTAAGAGAACCAACCGATTCACTCACAATGTCAGGCGAACGCACAAAGCAAGAGCTCTGTAACAGAAAGAAgtcaaaaaataaacacactcctttttaaaattattatgaaaaaatacaaacaattttACAAATATTCATATTGTGTAATAAACAATTTACACATAGTTCAGCACACCAGGtgaacgtgttttttttttgtaattactcAAATCGCTACAATGCATCCTCTTTTGTGTTTCATTagtggaagtttttttttttttttttcccttgattttttttttgcacgcgTAAACAAAAGTCCTCCAATTTAACAGTTGACTGCAGATGaggtaaaacacaaaacacacacatacccccacatacatacatacatacatacatacagacaatAGACAATAAGGGTGTACAACACCAGGGAAGTTACAACTGTATAGATGAAATGTATAAACAATACCAGAAGGCCACAATCATGActgagtatattaaaaaaaaataactaaaactacAATGAAACATTGAAGTCACTGAAGAAATCTTATGCACAGTCAAGAGAATATGGATCATCTAATCACTAGAAGGATGTAAAATAATGAGATGTACAACTGGAATGAGTCTATGAATGATccaatttctgcataaatatggtCCCTATTCTCGCACTTACTGAACATAGTAAAACACAAAtgatacagctttggaaaatgTCAGGGGAGGAACAAAAAACAGCCTTACATGATGCTGTAACCAGAGCAGAAATTAACAGTGGCTCCACATGTCACtgatatgtatttaaaatgcatataaaaGAAGGCTTCCTAACAGTACATCTGCAAAATGTACAACTGCAATCTCTTTGGGTAAACAGACTCTATAATGTAAATGTGTCCTGCTCACAAACCCCATCCAAaccataaacatttaaaacataagcccacatttccttttcttttactcccctctctttctcagttGTTCAAACCAACTAAAATCTAATGTGGTGTAAAAGCAGAATATAGATGGCATACGGATGATTTCTGTGTACATGTACAGTCACAATtaacaaagaagaaaaataaacccattgccatttaaaatgattgacATTTCATATTCATTTGAACAATATTATAAAATGCACATAACTAAATAATCTTAACTGAAGAAACACcttttaaatattaactatAAAATGCAGATAATAGAAATGCATTTCcctttgagaaaaaaatattactacTTAAAATGCCTAAAATTAGAATCAGATGCAGCACATCAGCTGTAGATGATCAGCTCAGGTACATAGGGTGTTTTAACTCTGTTCTAACAAGAAAAGTTCCTTTCgattcattacattttacaaatgtacaaaatatttaaagacatttcttCAGTTTGATCTGTTTACTTATATTGTATCCATTTCTCAATACTGTTCAAACAAATGCTCAAATGTCCACAAATGTTTTAGTGTAACTGATTAACTACATTTGCTAGAGATGCCATTATGAAGTGTAGAAATTTGTTCGTGAAGACACACAGCAAGCATGAcctgttttttcattttctgccacAAATATGAAAAGGAAAGTGACActtctgcaaaaataaaaaaacgtacaaaataaactcaaaaccAAATGCATATTATAAACATATGACaaagcatttttataaacatttgcaTAAGattgtatgtttttatgttaaaCTGACTGGATGTGGTGTTTGTGAATTCTACGTATAGCCAGTCTATTCTGAATTCAGCTGAGTAAGTATGTTTTGCCTTctggacagaaagagagaacagacagagagaaaggggagCTGTTTGTCATTATTTAGGACTAAGGAATAGTGTGCAAGAACAAAAGTACAGGCAAAAACAGTCCTAATGTGTGACttaaaaagttatatatatttgatgGCCTTTTTTTCATGGTGGGCCGACTGATGCTAGACATTATGCACAGGTGTGATTTTCGGAAAACTTGGGTGGGCAGCACAGATGGTAAAGTATGACTTCCCAAATTAAGTGTGACAATCTTTTTTGTACCTTTAATACTTAGGGTATCTTGGCTGAAAGTGCATAAACAATTGAAAAAATCTGCATGTTTTGCATTCaacaaaaaatatccaaaacaaaaacaaaatatatataaaaaagtaggcTTTCATACTCTTGGAACACATCACAGATGACAGcactgaaaaaatgactaatccTATATTTTCACAATATAAGGAACATGTTTCTTTTACAGAATTTAACTTGTGCAATTACTATGATAAATACACTTTTGTtcttaaaaacaattttaaaatcaTAACAAAAAATCCTCTTAAGGCAACTCCTTAGcggaacattttttttccattttaaaaggGCGCAAATGGGAAACATCGAAGTAAGTCCACTGACAGGCAGAGAAAAATCAGACAGACAATCACGCCATCAACACCACATTATTACACTCGATTTGCTCGATTTACCCAGTAAAAACACAGTCTGCAGCTGTGCTTCTGATCTGGAGTTTGAGGACTCAGAGTAAATGTTACTTCAGCTCATCTGTGGGGATCTAATGGTAACACAGAGGAGGAAATGTGGGggattatactgtatgtaaaaaagGCACCTGTACAGGAAGGAGTGGACGTTGTTTCATTTGGAAACAAAACCCTCTCACACGCTTGACAAGGACAGTTTTGGAAGGCCCTAAATAAAATGCCCTTTCAGGTTACATGATTTTGTAGTATGATAATAAGCCTACCATGATATGAAGAAAGGTCACCATGTTACCCAGACCCAGCTCTGAAGGTAACATAGGTTTATTAAAGGAATGCTCAAAGATGATCAGTGTTTCACAGTAGAGTGGAGGAACTGCAGCATGCCTTCAAAGGGACAACGAACGACACGAACACGAgggacaaagaaaaaaagaaaaaacctgTAAATAGGTTTGTTTGGTTACATCTTCGTAAAACAGTCTGAATGAACTATATAGGCCTGTCCTGCAGTAAGTAACTGTGCAATAGATTTTACATGGTGTAACAAATAGAAGCACTTTTGAGTCTTGATAATTATTGTTCCAAAACATAGTTGATGTTCTGTCAATACGGAAAGGTCAAGTGAAGCTCAGGACAGACTCTGTGAAGATATGTCAAATCTGGAATGAAGAAGTGATGTAAACATGTTTGTGGTGCCAACTGTGCAGTACCATTAAGACGCAGGTTAAACCAGAACAACTCAGGAATGAatatgagagaaagaaatatgAAAGGGGAGCTAACAGGTCAAATTTGGGTCTGATATTTTGGtctcaaaaatggcaaaatgaaAGGCTTGAAGTGATTAGAAATAAAGCCTTACAGAGGAACCCTCCACTCGCAAGGTAAATCAGCATCACAGCTTCATTACACGTTCTCCATACTGAAGAAACGCTGGCAAGCACAACGATGAGGAAAGGACAGAAGGTTAGTTCACTAAGCTTTGCCATAAGTAACaaagtcatttaaaaagtatttagtgCGTTTGCTTTAGTTATTTGCAATAAGCTTGTGCTTTAAATTCAGGGTTTTCTGTCTTTGTCTTATTAATAAATTTGGCTCAAACATCAAACCCTCAAGTTTAAGACAGCAAATTGTGAAATATTATTGTTAAGTATGGTTTACATACAAGGTGACTTGGTGGAAGGGGGCTTCACTTTTGTTGTTTCCTAGACTATGCATAAAATCTGCTAATGTTTCTATCATTCTGGAGttagaaaaaaagcatttggcagtttagaataataaaaaaataaacatacactCATTATGCAACACTCCCTCTTTGCAAAAAGAGAGATGCTTGCATAAAGTATGCCGTTTTAACACCTTCAATAACAAATTACTGTTTCAAGAAAcagaaaagcactttttttgtGAAGACTAGGAAGACCTGAATACATTTTcctataaaaaaagacaaaatactcTTCAGAAATGGACACCTTTTCCTATTCTACTCAACATAGGGAGCCTGTAATGTTTTATAACATTAAGGGTGCAGTCAAGACTTACTACACAGAACCATATTCTCCAGCCCAGCCCACACCTCACTATAGAGCCCTGCCTACCGCTTTCCCGATGTACAGTCTGAGGAGGTGTATGCATACTCGATATGGATCTATACTGAGCCATATCCCTTACCTTCTACAGCTCACTCTGAAATGACAACACGG
>XR_453278.3
GAACACTGCCCTTTTCATTCCCAGTTTTCCCACTGTCATTTTCACCACCCCTTCTGCCCTGAGTGGCGAACATCTCACCATAACCACGATTCTCTCTGGAATCAAAAGTAATTAATCTATAGCAGTGATTCTCAAACTTTTTAGAACATGTACCACCAATGAGTTTCCAAGCTAAAATATTTACCCACCACATTATTTTGAttgtagttTTGGAGGAATTTGTCTGATGGTGGCAACATACAGCTAGCTGATTTTCTTAACATAAACCAGGTCAAGAACCACAGTTACATGGCATCGCTCAAAGAGCCTGTTAAAGGCATCCTTATTTGTATGGGTACCATTAAAAGCAAACTGCACAAGTTGTATTTTCATGGAAGGTGCACAAAGAgggaagaaaataaagagactcTCTGCCCCTCCAGTCTCAAGATTGACATTTATCTAACTGATAATCAGGATATCTGAAAGGAGGATAAGAGGATCTGGATATTTCTAAACACTGCATACAAACAACTCAGCACAGGCTCAAATACAGGAGAGAGGTAAGAGAACCAACCGATTCACTCACAATGTCAGGCGAACGCACAAAGCAAGAGCTCTGTAACAGAAAGAAgtcaaaaaataaacacactcctttttaaaattattatgaaaaaatacaaacaattttACAAATATTCATATTGTGTAATAAACAATTTACACATAGTTCAGCACACCAGGtgaacgtgttttttttttgtaattactcAAATCGCTACAATGCATCCTCTTTTGTGTTTCATTagtggaagtttttttttttttttttcccttgattttttttttgcacgcgTAAACAAAAGTCCTCCAATTTAACAGTTGACTGCAGATGaggtaaaacacaaaacacacacatacccccacatacatacatacatacatacataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102504 True 5807 lncRNA 0.38 3 24009970 24016230
XR_453278.3 False 931 lncRNA 0.37 4 24013806 24015454

Neighbor

gene id symbol gene type direction distance location
LOC103036104 LOC108432677,LOC108274966 coding downstream 35635 23925268 ~ 23974335 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding downstream 87748 23915791 ~ 23922222 (-)
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding downstream 237301 23747948 ~ 23772669 (-)
spg11 spg11 coding downstream 591825 23370623 ~ 23418145 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 863440 23025246 ~ 23146530 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 21027 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 134195 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 140909 24157139 ~ 24180647 (-)
LOC111193112 NA coding upstream 168339 24184569 ~ 24188202 (-)
pgghg pgghg coding upstream 246517 24262747 ~ 24274199 (-)
LOC111193113 NA non-coding downstream 10794 23995410 ~ 23999176 (-)
G76069 NA non-coding downstream 22443 23986749 ~ 23987527 (-)
G76042 NA non-coding downstream 99465 23900642 ~ 23910505 (-)
G76040 ambra1,LOC108432675,LOC107740878,LOC107559958,LOC107569709,LOC107720791 non-coding downstream 113759 23895354 ~ 23896211 (-)
G76035 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273 non-coding downstream 123798 23881814 ~ 23886172 (-)
G76086 prdm11 non-coding upstream 6899 24023129 ~ 24029595 (-)
G76080 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248 non-coding upstream 32346 24048576 ~ 24050518 (-)
G76104 LOC108432640 non-coding upstream 54468 24070698 ~ 24071676 (-)
G76125 NA non-coding upstream 89271 24105501 ~ 24109860 (-)
G76095 aromatase,LOC103156494,LOC106947725,LOC106932411,LOC102236527 non-coding upstream 111417 24127647 ~ 24133645 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 176902 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 643754 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1435957 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2736953 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2938724 21065319 ~ 21071246 (-)
deaf1 deaf1,LOC107726848 other upstream 224668 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 774962 24791192 ~ 24798616 (-)
G76377 NA other upstream 898068 24914298 ~ 24920365 (-)
G76424 NA other upstream 1167979 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1266559 25282789 ~ 25301768 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023878 NA non-coding NC_007136.7 CM002909.2 7714740 ~ 7724926 (+)