LOC103035272 (LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887)


Basic Information

Item Value
gene id LOC103035272
gene name LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24053061 ~ 24082844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102532
GGTGGAGTATCAGTGTGAGGGGTTTCtggagaaaaacaaagacaCTGTGAATGAGGAACAGATCAATGTGCTGAAGTCGAGTAAGTTTGCCTTACTGCTGGAGCTTTTCCAAGAAGAGGACAAAGCTCCAGGTCCTACAGCCACAGCAGTGCCTAGTCGCTTCAAGGTTGGGCGCAGCCAGTCCCTCAGAGAGCACAAAAAATCTGTTGGACTGCAGTTCCGGAACTCTCTGAACTTGCTGATGGACACCCTGAATGCTACAACTCCTCACTATGTGCGATGCATTAAACCCAATGACCACAAATCTCCTTTTATGATGGATCCAAGAAGAGCAGCACAGCAGTTGAGAGCATGTGGAGTTCTGGAGACAATCCGGATTTCAGCAGCAGGCTTCCCATCCAGGC
>XM_022671924.1
GAGAGAGAAGACAACCTCAAGGAGCATTTCCAGCTCTGAACAGACCCAGCAGGAGCGCTGAGAGGCGGCAGTGGACCCGGCTCTGCTGAgtttaaacatttacacacGTATGAAGAGTTTTTACCCTTCAGATCAGTTTCAGAAGTTCTGAAGAGTCGCGATGAGAGAGGCGCCGGTGCTCTACTCGAAGTATGCTCGGGTTTGGATTCCTGACCCTGTGGATGTGTGGAAATCAGCAGAGCTGACCAAAGACTACACGCCTGGAGACACTGCCCTACAGCTAGAGCTTGAAGATGGCACAGAGTTGGAGTATAAATTGGACCCCAAAAACAGCACCCTACCCCCCCTTCGTAACCCAGATATTCTGGTGGGAGAGAACGACCTAACCGCACTGAGCTACCTACATGAACCTGCAGTGCTGCACAACCTGAGCGTCAGATTCATCGACTCTAAGCTTATCTACACCTACTGTGGTATCATCTTGGTGGCCATCAATCCTTATGAGTCACTCCCAATCTATGGAGCAGATATCATCAATGCATACAGTGGGCAGAACATGGGGGACATGGATCCTCATATTTTCGCTGTGGCTGAGGAAGCGTATAAACAGATGGCGAGAGATGAGAGGAATCAGTCCATCATCGTGAGTGGGGAATCAGGAGCTGGGAAAACTGTGTCTGCTAAATACACCATGCGCTATTTTGCTACTGTCAGTGGTTCCTCCACGGAAACCAGTGTGGAGGAAAAAGTGTTGGCCTCTAGTCCCATAATGGAGGCTATTGGGAATGCCAAGACGACCAGGAATGACAACAGCAGTCGCTTTGGAAAATACATAGAGATTGGATTTGATAAGAACTATTACATAATTGGAGCCAACATGAGGACATACCTGCTGGAGAAGTCTAGAGTGGTGTTTCAGGCAAATGAAGAGCGCAACTACCACATCTTCTACCAGCTCTGTGCATCTGCCCATTTACCTGAATTTAAAGCCCTGCAGTTAGGCAGAGCGGATGACTTTCACTGCACTAACCAAGGCGGAAACCCTGTCATAGACGGAGTGGATGACGTACAGGAAATGCAGGCAACCCAGAGGGCTTTCTCGcttcttgGAATCAGTGAGAAACAGCAGATGGATTTGTTTCAGATCCTTGCAGCCATTCTTCACCTGGGCAATGTGGAAGTGATGGGAAAAGGCTCGGGAAactccagtgtttctGCTCAAAATCACCACCTGACTGTGTtctgtgagctgctgatggTATCTCAGGAGGACATAGCGCACTGGTTATGTCATAAAAAGCTCAAGACTGCTACAGAAACCTTCAACAAACCTCTGGCCAAAACAGAGGCTGTTGATGGTCGGGATGCATTAGCTAAACACATTTATGCTAGGCTTTTCACATGGATAGTGAGTCAGATCAACAAGGCTCTGCTTTCATCCAGCAAGCAGCATTCCTTTATTGGGGTGCTAGACATCTATGGGTTTGAAACATTTGAAATCAACAGTTTTGAGCAGTTTTGCATTAACTATGCCAATGAGAAACTCCAGCAACAGTTTAACATGCACGTGTTCAAACTGGAGCAAGAGGAGTACTTGAAAGAGCAGATCCCATGGACCCTGATTGATTTCTATGACAACCAGCCATGCATTAATCTCATCGAGGCTAAGATGGGAATTTTGGATCTGCTTGATGAGGAGTGTATGGTGGAGTATCAGTGTGAGGGGTTTCtggagaaaaacaaagacaCTGTGAATGAGGAACAGATCAATGTGCTGAAGTCGAGTAAGTTTGCCTTACTGCTGGAGCTTTTCCAAGAAGAGGACAAAGCTCCAGGTCCTACAGCCACAGCAGTGCCTAGTCGCTTCAAGGTTGGGCGCAGCCAGTCCCTCAGAGAGCACAAAAAATCTGTTGGACTGCAGTTCCGGAACTCTCTGAACTTGCTGATGGACACCCTGAATGCTACAACTCCTCACTATGTGCGATGCATTAAACCCAATGACCACAAATCTCCTTTTATGATGGATCCAAGAAGAGCAGCACAGCAGTTGAGAGCATGTGGAGTTCTGGAGACAATCCGGATTTCAGCAGCAGGCTTCCCATCCAGGTGGACATATCAGGAGTTTTTCATCCGCTACAGAGTGCTGATGAAACAGAAGGATGTCCTCTCCGATGGAAAACTAACATGCCAGAATGTTCTCCAGCAGCTCATACAGgaCCCAGATAAGTACAAGTTTGGGAAGACCAAGATCTTCTTCAGGGCTGGACAAGTGGCATACTTGGAGAAACTGCGGGCTGATAAACTCCGTGCAGCTTGTGTCCAGATTCAGAAGACCATCCGCTGCTACGTAGCCCGCAAAAAATACCTGCGTCTGCGCTGGTCCACCATTACTATCCAGAGATATGTGAGAGGACAGCAGGCCCGAGCCTTGTGCAAGTCCCTGAGGAGAACAAAGGCAGCTGTGGTCATTCAGAAGTACCAGCGTATGTGTGCAGCCAGACGATTGTACCAGCGGAAGCAGTTGGCAGCTGTGCTACTTCAGCGGCTGCTTCGTGGCTATGCGGCCAGACTGCAGTATAAACAGCTGCGGTATGAGCAGAAGGTTGTGGTGGTGCAGCGCTGGGTGCGTGGCTGGCTGGCTCGAGTGCAGTATAGAAGAACCATGCAGGCTGTGGTgtatctgcagtgctgtgtacGGAGGATGCTGGCACGGCGAGAGCTAAAGAAACTCAAGATTGAAGCGCGGTCAGTCGAGCACTACAAGAAACTCAATGTCGGCATGGAGAACAAAATCATGCAGCTCCAGAGGAAAGTGGACGAGCAGAATAAGGAGAACAAGGAGCTGTTGGAACGGATAAGTGTTATAGAAAGCAGTAGTGTGGCTGAGCTGAAGAAGTTGCGCCCTCAGATAGAGGCTCTGCGAGGAGTGGAGGAAGATGCCCGACGTCTTAATGATAAGGTGTCCACGCTAGAAGAGGAGCTCCAAGTTACTTGTGAGGAATTGGAAAAGAACAGAAAGaTGGTTGAAGAATTAAATGAGAAGAACAGTCTCCTGAAGAGTGAAAAAGATGAGCTGAACACCATGATTAAGGAACAGGGCCAGCAGATAACTGATAATCTGCAGAAAGCCCATCAGGAGCACGTGGAGCTTCTGCAGACAGAGCTATATGAAGAGCGCAGTCGCTACCAGAACCTTCTAACTGAACACCTCAAACTAGAAGAGCAGCATGCTGATCTGAAATCAGAGATGAATGAAGCAACGCATGTGTCCAAACTTGGTCGCTTAGGAACGGACTCTGCTTACAGCAGCAATGAGTCAGAATATACCCGCTGCTCTGAGTTCACAGGGTCGGAGGTCAGCTTACAGGGTCAGGAGATGGAACTGCAGGGTGGTGTGGATGTGGCTCTCCTGTTAAAGCTGCAAAGACGAGTAGCTGAGTTGGAGCAGGAAAAGCTAAACTTGCAGAGCGAGTGGGACTCCAGAGAGGATCTCCTCCAACAGCACCATGCTAAGGAACTAGAAGAGTGTCGTAGAACAGTAGGTGGTGAGAGAGACTATGAGGCACAGAAGCGGCAAGAGCTGGAGTCAGACAATAAAAGACTAAAGAAGGACCTGAATGAGCTGCGTGCGTCTCTGAGTGTGAAGAAAGGTTCAGGACGGGCTTCCCCTGGATCCTCGGCCTACAATGTTCTCCTGGAGCAGTTGAGCTCCGTCACTGAAGAACTGGAGGTGCGCAAGGAGGAGGTGCTCCTTTTACGCACTCAGCTGGTCAGCCTAGAGGCCTTCAAATATAAGGAAGCGGCATCTGAAGGCGACGCTGGTGACACCAGCAGGTCCCCCACTCTGGATCTACATGAACTGAATGAGGATGGAGAGCTGTGGATAGTATATGAGGGCTTAAAAGAAACTAATAGgcTGTTGGAGTCTCAGTTGCAGAGTGAGAGGGAGCATCAGGCTCAGGAGCTACAAGCTCTGAAAGCAGAGCTACAGACTCTAAAGGAGGAGAgagaccagcagcagcagcttctctcacacacattgcaGCTGCCCAAGGATGGCCGTGTGCACACTGCCCTCCAGCTCGAGATCAGCCGTCTCACCCGCCATAATGTGGACCTGTTGGAGCAGATGGATAAGCAGGACAAGACCATTCGCAAGCTGAAGAAACAGCTAAAGATTTACATGAAGAAGGCTGAAGAGACAGACTCAGATGTCCATGTAGATGAGCCTATTCCAGAGAACAGAGTGATTGAAGCAATGCCAGAAATCAGTATCTTACGTAAGGAGCGACACTGCCGTGGAATGCTGGAGTATGGAAACGATGATGAGAGCAAGCTGGTGAAGATCCTTATTACAGAACTGAAGCCTAGAGGGGTTGCTGTAAGCATGATCCCATGCCTGCCAGCGTACATTCTCTTCATGTGCCTGCGCCACGCTGACTTCACCAACAACGACCAGAGAGTCTGCACACTGCTCAACTGCTCCATCAACTGCATCAAAAGTGTGCTAAAGAAAAAAGGTGATGACTTTGAAACGGTTTCATTTTGGCTGGCCAACACTTGCCGTCTCCTGCATTGCCTGAAACAGTACAGTGGAGAAGAGGACTACACTAAGCACAACACTGCCCAGCAGAATGAGCAGTGCCTGCTCAACTTTGACTTGACTGAGTACAGACAAGTTCTGAGTGACTTGATTATCCAGATCTACCAGCAGCTCATCAAGTGCATGGAAAACATCCTCCAACCTATGATTGTGGCGGGTATGTTGGAGCAGGACACCATCCCAGTGTTGCTGGGTCCAAAGCCCACAGGGCTGAGAAAGCGTACCTCCAGTTTTCCTCAGGACAGCTCCTTTTCATTGGAATCTCTTCTAAAACAGCTCAGCTCATTCCACTCCACTCTACTTCAACATGGCAACGATCCGGATCTCATCAGACAGGTGgtcaaacagcaattttacttCATCGGCGCTGTCACATTAAACAGTCTGCTTCTGCGCAAGGACATGTGCTCTTGGAATAAAGGACTGCAGATCAGGTATAATGTAAGTCAGCTGGAAGAGTGGCTGATGGATGCAGGTGTTCAGGGCGGAGGGATGCGGGAGATGCTTGAGCCGCTCATTCAGGCTACTAAACTGCTGCAGGTCAATAAAAAGACTGAGGAAGATGCAGAAGCCATCGCCACCATGTGTACGGCTCTTACAGCTGCACAGATTGTAAAAATACTCAACCTTTACACACCCATCAATGAGTTTGAGGAGAGAGTGTCTGTCTCTTGCATGAAAGCCGTACAGGCCTTGTTAAAGAACCGACAGGAGTCTCCTCAGTTACTGATGGACAGTAAAATAGTCTTCCCCATCACTTTCCCCTTTAACCCCTCTCCTGTGGCCCTGGAGAGCATTCAGATACCAGCCAGCCTCAACCTCAGCTTCCTCACAAGCCATTAGACAGTCACAGCTGGGATGTGATCTGTGAACATTGTGTCATATCTTTTTCAAGCCAAATTAGATATTCTGCTGCACTAAATCTAACCAAAGAAATGAGCACTTTTAGCAGTTTAACATGCTAAATTTCTTAGCCTACATACATGTTCACCTTTAATGCAGTAGATGAGGAGCTGGTTAATTAGTTGGCGAGTTAATTCGATTGAGTGAGTGCACGGAAACATGAATAATGTGTGAGCTGCTCCTGGTCTGGGTTTGGGAATCTCACTTCTGACACACTTGTTACTTTGTTTAACACGTTTGTCACACATTTGTTCATTTATGGTTAGCACTAATGGGAACTTTCTCCTTAAGAGAAATCATGTTGCCTTATTGATAACAGAGGTGGGTGCAGGGTGGGTACTGTGTGTTTggaaatgttatatttatatagaactGACTTTTGTAAGTTGGTCAGTGGACTGTTGCTGTTGTCACTGTGTCTATTAAGTGTGAAATGTATCTTTGCTCCATATATTTAAAACTGTGTATCATGTCTGCTGTGTTAAGTTAACTTGtagttttaatataataaataataaattcttTTGTTTACCTTTATGTCCAAAAACCAACAAAACAAAGCGAAATATAAGCACTTGGATTATTTAGGTATTCATACTATTAAAATGaatgtgtatttaatattaaattaatgtacAATTTTCcacaatatatatgtacatgtgCAAGTATGAATGCTCAGAAAAAGAACAGCAAaccttaaaatatgtattattttttaatgttttcttctccaacaaaaaaagttttctttgtgtaacattaaaagttaaaaaataaaggtatttTTTGACT

Function

NR:

description
PREDICTED: unconventional myosin-Va-like

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10357 MYO5; myosin V

RNA

RNA id representative length rna type GC content exon number start site end site
TU102532 False 404 lncRNA 0.49 4 24065552 24067389
XM_022671924.1 True 6301 mRNA 0.47 39 24053061 24082844

Neighbor

gene id symbol gene type direction distance location
LOC103034513 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248,LOC107559970 coding upstream 2529 24048540 ~ 24050532 (+)
bet1l bet1l,LOC107740886,LOC107569707 coding upstream 5987 24044146 ~ 24047074 (+)
prdm11 prdm11,LOC106560765 coding upstream 23418 24015475 ~ 24029643 (+)
LOC103036608 phf21ab,LOC108432679,LOC107673221,LOC108275277 coding upstream 38715 23979811 ~ 24014346 (+)
ambra1 LOC108432675,LOC107670191 coding upstream 142540 23887608 ~ 23910521 (+)
myo5c myo5c coding downstream 948 24083792 ~ 24107824 (+)
LOC103032917 gnb5,LOC108432683,LOC105018176,LOC106584742 coding downstream 26361 24109205 ~ 24117294 (+)
ap4e1 ap4e1,LOC107571341 coding downstream 37664 24120508 ~ 24132034 (+)
drd4 drd4,drd4a,LOC107726856,LOC107551439,LOC107674856,LOC107561186,LOC107655149 coding downstream 129142 24211986 ~ 24225714 (+)
LOC103029535 pidd1 coding downstream 259899 24342743 ~ 24359175 (+)
G76060 LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429 non-coding upstream 11445 24040374 ~ 24041616 (+)
G75988 NA non-coding upstream 75639 23977065 ~ 23977422 (+)
G75957 NA non-coding upstream 270068 23782032 ~ 23782993 (+)
G75889 NA non-coding upstream 759919 23292836 ~ 23293142 (+)
G75882 NA non-coding upstream 778048 23274570 ~ 23275013 (+)
G76197 NA non-coding downstream 196650 24279494 ~ 24280790 (+)
G76202 NA non-coding downstream 206548 24289392 ~ 24291726 (+)
G76217 NA non-coding downstream 358241 24441085 ~ 24462559 (+)
G76219 NA non-coding downstream 371367 24454211 ~ 24456691 (+)
G76225 NA non-coding downstream 444787 24527631 ~ 24563160 (+)
LOC103038709 LOC103038709,LOC108432651 other upstream 15200 24032092 ~ 24037861 (+)
G75974 NA other upstream 135458 23915791 ~ 23917603 (+)
G75938 LOC105900730,LOC105912833 other upstream 565191 23487530 ~ 23487870 (+)
LOC103047784 LOC108428360,LOC108274708 other upstream 1237539 22781735 ~ 22815522 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other upstream 1272102 22754973 ~ 22780959 (+)
G76192 NA other downstream 175665 24258509 ~ 24260506 (+)
LOC111193110 NA other downstream 790556 24873400 ~ 24898537 (+)
G76358 NA other downstream 863944 24946788 ~ 24948149 (+)
LOC103022391 parvb,LOC108432702 other downstream 892097 24974941 ~ 24983714 (+)
LOC103022708 NA other downstream 905552 24988396 ~ 25004515 (+)

Expression


Co-expression Network