G76125


Basic Information

Item Value
gene id G76125
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24105501 ~ 24109860 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102586
ttttatctcctttatatacaattttttttttatacataaaagcattttaaagtgtAGGCAAAAAAATCACTCAAACATTTTTTGACACAGATTAAAAAATTGTAAGTcatctgttttaaaaatacattttgtataaTCCTAATAGCACACTGATTCTCGTTGTGATTTAAGGGCTTGAAGCTAAAAAGTCAGTTGTCAGGGTCAGAGGTCATATGCGGGTGAGAAAGCCCAGGTGAAGGCTGCTGGGCACCTGCAGCAGCTCCAGGGCTTGTGTGGATGGGCAAAAAGGAAAAGTGACCTGGAATCGATACTGTGCATCCATCATCAGCTGATTTGAGCCCTCACGCTCCTGCAACAGTCCCTGGAGCAGAGGTCTTTGCGGAGGAGGATGCTGTTGAGTGAGGTGGCTCCTATCAGGTAGAAGAGCTGGCGAATGGCCTGtccctgcagctgcagctccatGCCCTGCTGTGCCATGGCGTTGTGGAAGGAGTTCATCAGCTGCAGGATAGAGGAGACACTGTAGGCCTGACCTTCACTGCGCCCTTCCTCCAGCAAGCTGTTGGAGCGCTTACGGAAACCTGTGGGCTTCATGCTAGAGATTCCCTGTAGACTCTCATGCTCCAGCATTGCAGGGACTGCAGCCACAC
>TU102587
gccGCCTGAAACACAACAACACCAGCAGCAGGctgtgtctctctgtatctgtgtgagCAGGTCTGTGCAGTGGTCCaggcccccctctctctctataagaCACTCACGCTCCACATCATGCAGCTTGGctctctcctcctccagcttGGTCTTCAGAGCCTCAGACTCGCTCTTCAGCTTGGCTATGGTCTCACTGGGCTGCACCTCCTGAGCAGCCATTTTCACCGCTGGAAAAAAGCGCTCCACCTGCACGCAGAGAGAGAAGGCTCCTCTTTTTCcgtgagagaaggagagagagagagagagagatgaaggagagagagagagagagagaaggatgctGGATAGGCAACAGCTGACGCAGCTGCCGTGACGTAACGGGAGGGCTTGCTCTGCCCACAGAGACCCACAGAGAGACTCAGGAGTTCAGCAGGAGCAGGGCTGTGTAGACTACACAGCTCTCTGACAGGATCTCAGCAGCTCAGGAATCAATAGTAGAGCATTGAAGGCAGAGCTTATACTGATACACATCCAGTGTAGGGTGGAGTGTGTGCTCTCAGAGCCATTGTGTAATTTATTCAAGGATTTAATGGTGTTATTTGATAAGAGTGtgatttattttggttttatagAACTCTCTCATTAAtgcagatctggaaaaaaatgaagagatcacttaagtttctgaatcagtttatctgattctgctatttataggtatatgttgttttattctaaaaactaaggacaacatttctcccaaattccaaataaaaatattgtaatttagagcatttgctcgcagaaaatatgaaatggctgaaataacaaaaaaaagagctatcagacctcaaattatgcaaagaaaacaagttcaaattcaaagttttaagagttcagaaatcaatgttctccttcaccagtcttttgGATAcctatgccactactggtgcaaaacattcaagtagttcagcttggtttgtggcttgtgatcatccatccctccccttaattatattccagaggttttcaattcggtaaaatcaaagattaaGTCATCTCTAATTTGTTCCAAAGCTGTAGTATAGAAAGGCtgttttaaattctttaatatGCTATTTGGATAACATTTTGATTTGTTGGTTTTacaggactccaaaatctgggtTAAACTTTTTGTAATGTGggggagcagtagctctccagcccagattgtagaacccaagtgcagagcagcagactacaaagcaggtaaactcaaCAGGAACCCCTCAACACAGGTGGTTAACAAAAACCCGAAAACGTTGAGACCTGAGAAGGGGCTCAAAATAAATCTCGCCGAGCGCaagagacaaaacaaaacaaaaacggCTTCTCAGAACTGAACGGGGAGTGTATAAGGTGGTTGTGGACTGGGCTGTGGTTCCAGCAGGGAAAAGGAGGAACCGGGTCGAAAAACAaaaaggtaaacaaacacacaaactcactTTCTGGCTggatagagagagtgagcgcgAGGGAGGggggagcagagcagagagacgCTCAGCCCTGACTCCCACAGACTCCAGAGGAAGGGATAGGGGAAAAACGAGAGGGGAGGAGAAAGCCGGCTTTGTCCAGTCTTACTCCAAGCACAGGCAGGAAAAGGGCAACCGCCCTGGACAGAGCAGGGAGGAAAAGCGAGCCGGAGCTCAGAGGAAAATCCGGCATAGATTCACTCCGatgagcttcaaagatccagctcGAGGAACTGAATCTCAGAGTTTGGGGGCAGACCCAGGTGGAGTGGATCAGGTCTGATTAGGGGCTCGAGACCTCCCCCTGGCAGCCGAAGAAGCCCTCGGCCGGACCCCAGCCCTTACAGTTTTCCTAGGGCTTGAAGCTAAAAAGTCAGTTGTCAGGGTCAGAGGTCATATGCGGGTGAGAAAGCCCAGGTGAAGGCTGCTGGGCACCTGCAGCAGCTCCAGGGCTTGTGTGGATGGGCAAAAAGGAAAAGTGACCTGGAATCGATACTGTGCATCCATCATCAGCTGATTTGAGCCCTCACGCTCCTGCAACAGTCCCTGGAGCAGAGGTCTTTGCGGAGGAGGATGCTGTTGAGTGAGGTGGCTCCTATCAGGTAGAAGAGCTGGCGAATGGCCTGtccctgcagctgcagctccatGCCCTGCTGTGCCATGGCGTTGTGGAAGGAGTTCATCAGCTGCAGGATAGAGGAGACACTGTAGGCCTGACCTTCACTGCGCCCTTCCTCCAGCAAGCTGTTGGAGCGCTTACGGAAACCTGTGGGCTTCATGCTAGAGATTCCCTGTAGACTCTCATGCTCCAGCATTGCAGGGACTGCAGCCACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102586 False 650 lncRNA 0.47 2 24105501 24107122
TU102587 True 2355 lncRNA 0.48 3 24105501 24109860

Neighbor

gene id symbol gene type direction distance location
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding downstream 62348 24037257 ~ 24043153 (-)
LOC103036104 LOC108432677,LOC108274966 coding downstream 131166 23925268 ~ 23974335 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding downstream 183279 23915791 ~ 23922222 (-)
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding downstream 332832 23747948 ~ 23772669 (-)
spg11 spg11 coding downstream 687356 23370623 ~ 23418145 (-)
LOC103033668 LOC108432685 coding upstream 40565 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 47279 24157139 ~ 24180647 (-)
LOC111193112 NA coding upstream 74709 24184569 ~ 24188202 (-)
pgghg pgghg coding upstream 152887 24262747 ~ 24274199 (-)
LOC103030184 LOC108432690,LOC108274702 coding upstream 169617 24279477 ~ 24320804 (-)
G76104 LOC108432640 non-coding downstream 33825 24070698 ~ 24071676 (-)
G76080 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248 non-coding downstream 54983 24048576 ~ 24050518 (-)
G76086 prdm11 non-coding downstream 75906 24023129 ~ 24029595 (-)
LOC103037768 NA non-coding downstream 89271 24009970 ~ 24016230 (-)
LOC111193113 NA non-coding downstream 106325 23995410 ~ 23999176 (-)
G76095 aromatase,LOC103156494,LOC106947725,LOC106932411,LOC102236527 non-coding upstream 17787 24127647 ~ 24133645 (-)
LOC111193111 NA non-coding upstream 78484 24188344 ~ 24190313 (-)
G76247 NA non-coding upstream 168980 24278840 ~ 24279088 (-)
G76266 NA non-coding upstream 285352 24395212 ~ 24401713 (-)
G76272 NA non-coding upstream 418211 24528071 ~ 24538687 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 272433 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 739285 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1531488 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2832484 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 3034255 21065319 ~ 21071246 (-)
deaf1 deaf1,LOC107726848 other upstream 131038 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 681332 24791192 ~ 24798616 (-)
G76377 NA other upstream 804438 24914298 ~ 24920365 (-)
G76424 NA other upstream 1074349 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1172929 25282789 ~ 25301768 (-)

Expression


Co-expression Network