LOC111193111


Basic Information

Item Value
gene id LOC111193111
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24188344 ~ 24190313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102626
CTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCGCAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAAA
>XR_002650265.1
AATTCAAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCGCAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGA
>XR_002650266.1
GTATTAGCTAGtataactagctaagctaaccagGCTAACTAGCTGAAATAAACGCTGTTAACTCATTTTGCTCGAGtaacacaccttttttttattaaaataaacaactttaGTTATTCTTAGAACCTTAAATAGTTGTGTTTGGGCTTAATTATAATAAAGCTCGTCAGACGTTTTCCTGCTCCACCTTGTATAGGTTGCTGCAACAGTGATTAATAGTTAGGTTTACAAAACTTATTGCctcatttagtttagtttgttcaTTATTTGCAAATAAGTTTTTGGATAACTCAATCTGGATACATAAAGTCTGATGCAAATCTGATGTATGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCGCAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU102626 False 277 lncRNA 0.45 4 24188344 24190304
XR_002650265.1 False 247 lncRNA 0.47 4 24188383 24190313
XR_002650266.1 True 525 lncRNA 0.37 4 24188383 24190077

Neighbor

gene id symbol gene type direction distance location
LOC111193112 NA coding downstream 142 24184569 ~ 24188202 (-)
LOC103025218 NA coding downstream 7697 24157139 ~ 24180647 (-)
LOC103033668 LOC108432685 coding downstream 32323 24150425 ~ 24156021 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding downstream 145191 24037257 ~ 24043153 (-)
LOC103036104 LOC108432677,LOC108274966 coding downstream 214009 23925268 ~ 23974335 (-)
pgghg pgghg coding upstream 72434 24262747 ~ 24274199 (-)
LOC103030184 LOC108432690,LOC108274702 coding upstream 89164 24279477 ~ 24320804 (-)
pnpla2 LOC108432691 coding upstream 132053 24322366 ~ 24336222 (-)
LOC103024275 lrrc10b,LOC107754340 coding upstream 516359 24706672 ~ 24710102 (-)
eps8l2 eps8l2 coding upstream 552456 24742769 ~ 24788358 (-)
G76095 aromatase,LOC103156494,LOC106947725,LOC106932411,LOC102236527 non-coding downstream 54699 24127647 ~ 24133645 (-)
G76125 NA non-coding downstream 78484 24105501 ~ 24109860 (-)
G76104 LOC108432640 non-coding downstream 116668 24070698 ~ 24071676 (-)
G76080 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248 non-coding downstream 137826 24048576 ~ 24050518 (-)
G76086 prdm11 non-coding downstream 158749 24023129 ~ 24029595 (-)
G76247 NA non-coding upstream 88527 24278840 ~ 24279088 (-)
G76266 NA non-coding upstream 204899 24395212 ~ 24401713 (-)
G76272 NA non-coding upstream 337758 24528071 ~ 24538687 (-)
G76274 NA non-coding upstream 443514 24633827 ~ 24659292 (-)
G76288 NA non-coding upstream 524897 24715210 ~ 24715538 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 355276 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 822128 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1614331 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2915327 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 3117098 21065319 ~ 21071246 (-)
deaf1 deaf1,LOC107726848 other upstream 50585 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 600879 24791192 ~ 24798616 (-)
G76377 NA other upstream 723985 24914298 ~ 24920365 (-)
G76424 NA other upstream 993896 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1092476 25282789 ~ 25301768 (-)

Expression


Co-expression Network