LOC103025724 (tmem80)


Basic Information

Item Value
gene id LOC103025724
gene name tmem80
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24791192 ~ 24798616 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102870
CAGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACA
>XM_007235111.3
cgcgcgagagagagagactgactgggtgttgtagatgtgatgtttttatgtttacacGAATTCTTAGAAACGTCAAATCCTAAATAAACTGACTTTACATAAACTTTAACTTATAGAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGTACGCTGCGGGGTTGCTATAGATACGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA
>XM_007235113.3
cgcgagagagagagactgactgggtgttgtagatgtgatgtttttatgtttacacGAATTCTTAGAAACGTCAAATCCTAAATAAACTGACTTTACATAAACTTTAACTTATAGAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA
>XM_022672404.1
ctcacacacacacacacacacacacacacacaaacagAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGTACGCTGCGGGGTTGCTATAGATACGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA
>XM_022672405.1
gagagagactgactggAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGTACGCTGCGGGGTTGCTATAGATACGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA
>XM_022672406.1
cacacacacacacacacacacacacacaaacagAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA

Function

symbol description
tmem80 Predicted to be involved in non-motile cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in ciliary transition zone.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102870 False 1320 lncRNA 0.42 5 24791248 24797219
XM_007235111.3 True 1649 mRNA 0.42 6 24791192 24798468
XM_007235113.3 False 1620 mRNA 0.42 6 24791192 24798466
XM_022672404.1 False 1570 mRNA 0.43 7 24791192 24798616
XM_022672405.1 False 1549 mRNA 0.43 7 24791192 24798459
XM_022672406.1 False 1539 mRNA 0.43 7 24791192 24798612

Neighbor

gene id symbol gene type direction distance location
eps8l2 eps8l2 coding downstream 2834 24742769 ~ 24788358 (-)
LOC103024275 lrrc10b,LOC107754340 coding downstream 81090 24706672 ~ 24710102 (-)
pnpla2 LOC108432691 coding downstream 454970 24322366 ~ 24336222 (-)
LOC103030184 LOC108432690,LOC108274702 coding downstream 470388 24279477 ~ 24320804 (-)
pgghg pgghg coding downstream 516993 24262747 ~ 24274199 (-)
LOC107197705 NA coding upstream 150428 24949044 ~ 24950022 (-)
LOC103023960 kiaa1644,LOC108274641 coding upstream 214677 25013293 ~ 25101100 (-)
mpi mpi,LOC106560745,LOC106584640 coding upstream 518510 25317126 ~ 25327553 (-)
LOC103047119 neo1,LOC108275206 coding upstream 552909 25351525 ~ 25561947 (-)
bbs4 bbs4,LOC107754319,LOC107701057 coding upstream 816804 25615420 ~ 25631771 (-)
G76292 NA non-coding downstream 54923 24727311 ~ 24736269 (-)
G76288 NA non-coding downstream 75654 24715210 ~ 24715538 (-)
G76274 NA non-coding downstream 131900 24633827 ~ 24659292 (-)
G76272 NA non-coding downstream 252505 24528071 ~ 24538687 (-)
G76266 NA non-coding downstream 389479 24395212 ~ 24401713 (-)
G76340 NA non-coding upstream 47425 24846041 ~ 24860482 (-)
G76372 NA non-coding upstream 93545 24892161 ~ 24892392 (-)
G76376 NA non-coding upstream 122557 24921173 ~ 24922447 (-)
G76378 NA non-coding upstream 132287 24930903 ~ 24937062 (-)
G76385 NA non-coding upstream 138578 24937194 ~ 24946682 (-)
deaf1 deaf1,LOC107726848 other downstream 530662 24240898 ~ 24260530 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 958124 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 1424976 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 2217179 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 3518175 21269504 ~ 21273017 (-)
G76377 NA other upstream 115682 24914298 ~ 24920365 (-)
G76424 NA other upstream 385593 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 484173 25282789 ~ 25301768 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 2058013 26856629 ~ 26878862 (-)

Expression


Co-expression Network