G76340


Basic Information

Item Value
gene id G76340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24846041 ~ 24860482 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU102879
aTGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGCGGGGAGCGAGTCTGTACAGCGGATCGCTTCGTCATCGCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGAGTCTGTACAGCGGATCGCTTAGTCATCGCTGCGGGACACAGAGTCTTCACCGCGATCGCTTTGTCATCACCGCAAGGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCActagaga
>TU102882
aTGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGAGTCTGTACAGCGGATCGCTTAGTCATCGCTGCGGGACACAGAGTCTTCACCGCGATCGCTTTGTCATCACCGCAAGGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGTGAGTTCTACACTTTAAAAGCTGGTATTTTGGTTGGTTTTACGTGCATAGGTGAAGGTATAactgtttagctaagctaataagAGTGGGTTAAGCAAATCTTTTTCAATTGTAcccttttttttctgatgagTTAAGGCTGTAATTCTGTAATGTTTAATACTACTGTGCTGTGATATATTAACGCTAAGTTTGGGATGTTAGATGTGTAACCAGAGACATAAGAACCTAAAAGGCTACTGTAAATAGTTGTTAAATGTTaggaaaaaaaatctgattgAGCACTAAAAGCCATGTTTCATATGAATAGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCACTAGAGACTTTTATCTTGTTGAAATCCACACCTTtactatatttcttttattgaatttaattgaatgatTGGGTTGAATTCTTTTGAACTTAATTTACTgttgaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATTGGGAATCATTTATTCTGTTGGAAAAAGAAATCTGAGACTGAAAACtgtgtaaattatattatagaatAATATAAATACCATACTTACCTCTTAACCTGCAAAATAGACAATACCTACCTTAAATACTTACCATAATTCCctaattatacttaccttagATATTGATCCAAAACCCCTAACTTAAAACCtaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaat
>TU102883
aTGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGCGGGGAGCGAGTCTGTACAGCGGATCGCTTCGTCATCGCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCACTAGAGACTTTTATCTTGTTGAAATCCACACCTTtactatatttcttttattgaatttaattgaatgatTGGGTTGAATTCTTTTGAACTTAATTTACTgttgaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATTGGGAATCATTTATTCTGTTGGAAAAAGAAATCTGAGACTGAAAACtgtgtaaattatattatagaatAATATAAATACCATACTTACCTCTTAACCTGCAAAATAGACAATACCTACCTTAAATACTTACCATAATTCCctaattatacttaccttagATATTGATCCAAAACCCCTAACTTAAAACCtaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102879 False 1165 lncRNA 0.44 2 24859007 24860482
TU102882 True 2040 lncRNA 0.36 3 24846041 24860482
TU102883 False 1838 lncRNA 0.38 4 24846041 24860482

Neighbor

gene id symbol gene type direction distance location
eps8l2 eps8l2 coding downstream 57683 24742769 ~ 24788358 (-)
LOC103024275 lrrc10b,LOC107754340 coding downstream 135939 24706672 ~ 24710102 (-)
pnpla2 LOC108432691 coding downstream 509819 24322366 ~ 24336222 (-)
LOC103030184 LOC108432690,LOC108274702 coding downstream 525237 24279477 ~ 24320804 (-)
pgghg pgghg coding downstream 571842 24262747 ~ 24274199 (-)
LOC107197705 NA coding upstream 88562 24949044 ~ 24950022 (-)
LOC103023960 kiaa1644,LOC108274641 coding upstream 152811 25013293 ~ 25101100 (-)
mpi mpi,LOC106560745,LOC106584640 coding upstream 456644 25317126 ~ 25327553 (-)
LOC103047119 neo1,LOC108275206 coding upstream 491043 25351525 ~ 25561947 (-)
bbs4 bbs4,LOC107754319,LOC107701057 coding upstream 754938 25615420 ~ 25631771 (-)
G76292 NA non-coding downstream 109772 24727311 ~ 24736269 (-)
G76288 NA non-coding downstream 130503 24715210 ~ 24715538 (-)
G76274 NA non-coding downstream 186749 24633827 ~ 24659292 (-)
G76272 NA non-coding downstream 307354 24528071 ~ 24538687 (-)
G76266 NA non-coding downstream 444328 24395212 ~ 24401713 (-)
G76372 NA non-coding upstream 31679 24892161 ~ 24892392 (-)
G76376 NA non-coding upstream 60691 24921173 ~ 24922447 (-)
G76378 NA non-coding upstream 70421 24930903 ~ 24937062 (-)
G76385 NA non-coding upstream 76712 24937194 ~ 24946682 (-)
G76388 NA non-coding upstream 92361 24952843 ~ 24959934 (-)
LOC103025724 tmem80 other downstream 47425 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 585511 24240898 ~ 24260530 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 1012973 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 1479825 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 2272028 22442736 ~ 22574013 (-)
G76377 NA other upstream 53816 24914298 ~ 24920365 (-)
G76424 NA other upstream 323727 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 422307 25282789 ~ 25301768 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 1996147 26856629 ~ 26878862 (-)

Expression


Co-expression Network