G76514 (neo1,LOC108275206)


Basic Information

Item Value
gene id G76514
gene name neo1,LOC108275206
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25385287 ~ 25390947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103205
GTCCATGCTTGTTGCAAGCCACCACTCTGAAACTGTATTCTGTAAATTTCTTCAGCCCAGTCATTGTGTAGGTCAAACCTACAACATCGATGTCTTGCTCACTGGAGTCCTGTCCCTTCTCGCTGTAGTAGACTTTATAAGTCTGGATCTCTCCGTTTCCTGTGACTGGTCTCTCCCAGCTCAGAGTGACTGATGTAGGTGTAACGGTCACTGCCTGCAGGTTGGGGGCTGGTCCTGGTACCTGAACTTCAGGCTGGGTGGCCACTGTCAGGGGGGTTGAGCTTTCTCCTTGGCTGTTTCTGTTGGAAGCCACGACCCTGAAAGTGTACTTGGTGTCGGGGATGAGGTTCTGGATGGTGACCTGCATCTCGCCCGGAGCCG

Function

symbol description
neo1 Enables co-receptor binding activity. Acts upstream of or within iron ion homeostasis. Located in Golgi apparatus; nucleoplasm; and plasma membrane. Part of plasma membrane protein complex.

NR:

description
PREDICTED: neogenin isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103205 True 381 lncRNA 0.53 3 25385287 25390947

Neighbor

gene id symbol gene type direction distance location
LOC103046607 scamp2 coding upstream 39240 25327566 ~ 25346047 (+)
LOC103027043 LOC108429467,LOC108275406 coding upstream 68972 25313291 ~ 25316315 (+)
LOC103045999 LOC108429466,LOC106561822 coding upstream 73124 25302235 ~ 25312163 (+)
LOC111193062 NA coding upstream 114033 25269678 ~ 25271254 (+)
hps5 hps5,LOC106584758 coding upstream 122072 25249630 ~ 25263215 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding downstream 215840 25606787 ~ 25613446 (+)
LOC103023612 NA coding downstream 289146 25680093 ~ 25700055 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding downstream 336004 25726951 ~ 25778572 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding downstream 405491 25796438 ~ 25830701 (+)
mansc4 mansc4 coding downstream 448405 25839352 ~ 25843928 (+)
G76505 neo1,LOC108275206 non-coding upstream 25720 25356264 ~ 25359567 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding upstream 58218 25323393 ~ 25327069 (+)
G76468 NA non-coding upstream 66630 25317195 ~ 25318657 (+)
G76463 NA non-coding upstream 91359 25293405 ~ 25293928 (+)
G76367 NA non-coding upstream 400896 24984152 ~ 24984391 (+)
G76526 NA non-coding downstream 159898 25550845 ~ 25551311 (+)
G76539 NA non-coding downstream 244884 25635831 ~ 25642628 (+)
G76540 NA non-coding downstream 245533 25636480 ~ 25643923 (+)
G76541 NA non-coding downstream 246024 25636971 ~ 25645135 (+)
G76543 NA non-coding downstream 249640 25640587 ~ 25646478 (+)
G76464 NA other upstream 88819 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 103916 25271256 ~ 25281371 (+)
G76423 NA other upstream 200555 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 380772 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 401573 24974941 ~ 24983714 (+)

Expression


Co-expression Network