G76539


Basic Information

Item Value
gene id G76539
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25635831 ~ 25642628 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103233
CATCTAATTCTATGTTTCTACCTTTTTTAAATAGGgctagttttttttctcttaacacttttaaaatcatattaatcTAATGAGATGGGGCTTAAAGCAGCTTTATAtaagatttatttcttttatcatGTAAGCTTATAAAATGGAGCTCAAAGCAGGTTTATGATATTCCCCTGTCAAGAATGTATTTGTGCTTTGAATCACCACTGAATacatatcatattatatgttgattacactcagagactgtaaaaaaagatggacgtcgtgtctcCATTCCCATTcgttcagtgaaaatgaagccaaaaccttccgccatgttggcgatcctgatacccgagtctgtacAGTAGAgcccagaggagggagaaagactgtggagagacagcctactcatttgaataaccccgcccctgagggctgcctcacggtcacagactgcagagaggagctgatggtctgttattggtcccgcccataaccagccatTTTTCAATagccacacctttttgaatagagctgcataacgttttaaaaaacgaattttgtggggatataaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103233 True 562 lncRNA 0.39 2 25635831 25642628

Neighbor

gene id symbol gene type direction distance location
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding upstream 22385 25606787 ~ 25613446 (+)
LOC103046607 scamp2 coding upstream 289784 25327566 ~ 25346047 (+)
LOC103027043 LOC108429467,LOC108275406 coding upstream 319516 25313291 ~ 25316315 (+)
LOC103045999 LOC108429466,LOC106561822 coding upstream 323668 25302235 ~ 25312163 (+)
LOC111193062 NA coding upstream 364577 25269678 ~ 25271254 (+)
LOC103023612 NA coding downstream 37465 25680093 ~ 25700055 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding downstream 84323 25726951 ~ 25778572 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding downstream 153810 25796438 ~ 25830701 (+)
mansc4 mansc4 coding downstream 196724 25839352 ~ 25843928 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding downstream 217901 25860529 ~ 26053114 (+)
G76526 NA non-coding upstream 84520 25550845 ~ 25551311 (+)
G76514 neo1,LOC108275206 non-coding upstream 244884 25385287 ~ 25390947 (+)
G76505 neo1,LOC108275206 non-coding upstream 276264 25356264 ~ 25359567 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding upstream 308762 25323393 ~ 25327069 (+)
G76468 NA non-coding upstream 317174 25317195 ~ 25318657 (+)
G76552 NA non-coding downstream 9959 25652587 ~ 25654997 (+)
G76536 NA non-coding downstream 70804 25713432 ~ 25713850 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding downstream 444561 26087189 ~ 26093193 (+)
G76655 NA non-coding downstream 502997 26145625 ~ 26146752 (+)
G76833 NA non-coding downstream 928552 26571180 ~ 26571399 (+)
G76464 NA other upstream 339363 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 354460 25271256 ~ 25281371 (+)
G76423 NA other upstream 451099 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 631316 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 652117 24974941 ~ 24983714 (+)

Expression


Co-expression Network