G76590


Basic Information

Item Value
gene id G76590
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25636972 ~ 25645157 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103308
GGCAGGACATTTACCAGGGAAGATCCTTCCTGCCATCAGCACACTGGCGTTCGACGCTGCCGAGGAAGTGAGGACTCCTGCCCGAGCCGCCTTACGGTTTTTGGGCAGGCACAGAGAGGCTGCGGCAGCGGTGGAAAAATTTGTTTCCATTAGAGATCAGGCCTCAGTAAAACAATTACTTGAAAATTAATCAGATCAAATTAATCAGTTGTACAGTTTTTGTATATAGTTCAGATGTATTCGGTGTTCAGCTGTTCAGAGTGGGTTTGGGGTGAAATCTCTGTTCTAGAGAAGTTTACAGAGTCAGAGCTGTTCACAGTGGTGGAGACAGGTACCACATCTGAAGAGGTGGTCTAGGCAGGGACTCCACTTTCTTACCAGAGGTGGGGTCTCTGCTTGGCGGGAAACGCACCAGCCCTGTGGCATCAGGACATCCCAGTCAACCAGCTGGGAATGTCCTGCCCCAAAACAAGCCCTACAAAGCTTGTGAGGG
>TU103310
CTTTCCAGACCGTTTCCTCAGCACCCCGCTCCTCCACCTGGACCTCCGCCTGTCACTACCCAGCCAGACATGGTGAATAAAGCGCCGGCCTACTATTCACCGGgTAGCAGGATCCCGATCCTAGACAGGCGGAGGAAGCAGAGGCCTGCTGCAGGATGAGGAATGGTAAGATCTTTACTAATTCTTTAATTCTAACCGAGCAGAGATATGTTTTAGAGTAGTGCTCAGACTAGAGTTATAAGAGCTGAAGATTACTGAAAACATTAGAGACCATCTTCCAGATGTGTTTAATCTATAATTCTCTGCATGTTTTGGTTGTAAAACAGGGAAAGAAAAACCGAGGGACTGCGGCTTGTGCGAGCTCTGGCTGAGCACCATGCTGATGTGGTGCTGCCGGAGCTCCACAGCGTCAGCACAGCCGTCATTGAGGAGGTAAGAGTTTATAACACACTACATAAACACTCTACAGCAGCTTCTTCTGTAATGatatgattcagaaactgattcagagttcAATAGACCGAGGCTTAGTGTGCTGCTTCTGTTGTCTCCACTTTCTCAGATAAAAAACCTCAGGACAATAGTCTCTCGGGACGCCATTTACACCATGGCTCACCTGTTCCATCACCTGCAGCACAGTATGGACAGCGAGGTCGAGGGCGCCGCTCGCACCCTCCTGCACAAGGCTGGTGAGGCCAGTCTGTTTATTAAGGAGGGTGTGGAGCTCGTGTAGCTGGCTCAagtttgactgtgtgtgtgtgtgtgtcctctctctctctcctagtAGGCTTGGCCACCCTCTGCGTTGTGAATGCGATGATGGAAACACGGGACACACTCTGCCATACAACGGGAGTTTTATTCTCTCTATTTCCTGTGCCTGTGCATGAGAGTAGCATACAACACAGCATAGAGTGAATTCTGgtccttctcacacacacacgtgcagcTGTGAGAAGAAAAGCACACCATATTAGCTTAAGTGGTAGCAGTATCTCCCTTAACTCCACTAAATCTGCTgtacttatataaaaaaaactctctacACAAACGAACTACCCACACAACCAGAGATAACTTACTCTTAGTACTAAAACACATGTAAGAGTACAGATTTAGTGCACTATAAGTGCTTGAACagttttaaaacagtatttcATCAGGAGCACAGTAAACACCCACCTCTCCTCAGCAGCATTTAGCGCGAACTGAGGAGAGAGAAGCCCGCGCTGACACTGAAAACTCGCgcgatttcaaaataaaagtctgctCCGCAGTTCAGCTTAAAATCAATATTACAG
>TU103316
GGCAGGACATTTACCAGGGAAGATCCTTCCTGCCATCAGCACACTGGCGTTCGACGCTGCCGAGGAAGTGAGGTAAGCAACTGTCTGCTTTAATCAACCTAAAGCAACCACAATCATCTGATGAAGGAACCAGAACTAAATCCACTAACTGTTGTTATCTTTCTCTACAGGACTCCTGCCCGAGCCGCCTTACGGTTTTTGGGCGGGCACAGAGAGGCTGCGGCAGCGGTGGAAAAATTTGTTTCCATTAGAGATCAGGCCTCAGTAAAACAATTACTTGTAAATTAATCAGATCAAATTAATCAGTTGTACAGTTTTTGTATATAGTTCAGATGTATTCGGTGTTCAGCTGTTCAGAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103308 False 493 lncRNA 0.50 2 25644568 25645157
TU103310 True 1301 lncRNA 0.47 2 25639302 25640726
TU103316 False 363 lncRNA 0.45 2 25636972 25645157

Neighbor

gene id symbol gene type direction distance location
bbs4 bbs4,LOC107754319,LOC107701057 coding downstream 5201 25615420 ~ 25631771 (-)
LOC103047119 neo1,LOC108275206 coding downstream 75025 25351525 ~ 25561947 (-)
mpi mpi,LOC106560745,LOC106584640 coding downstream 309419 25317126 ~ 25327553 (-)
LOC103023960 kiaa1644,LOC108274641 coding downstream 535872 25013293 ~ 25101100 (-)
LOC107197705 NA coding downstream 686950 24949044 ~ 24950022 (-)
adck2 adck2,LOC107669038 coding upstream 10608 25655765 ~ 25661625 (-)
mrps35 mrps35 coding upstream 199460 25844617 ~ 25857522 (-)
cdkn1b NA coding upstream 427940 26073097 ~ 26077993 (-)
yars2 yars2 coding upstream 434219 26079376 ~ 26085001 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 446105 26091262 ~ 26134844 (-)
G76585 adpgk,LOC107549595,LOC107745566,LOC107569355 non-coding downstream 21621 25612125 ~ 25615351 (-)
G76579 NA non-coding downstream 40309 25596425 ~ 25596663 (-)
G76570 NA non-coding downstream 72542 25529824 ~ 25564430 (-)
G76453 NA non-coding downstream 398959 25236454 ~ 25238013 (-)
G76438 NA non-coding downstream 423946 25207830 ~ 25213026 (-)
G76595 NA non-coding upstream 68326 25713483 ~ 25713920 (-)
G76676 NA non-coding upstream 117365 25762522 ~ 25830697 (-)
G76701 NA non-coding upstream 433281 26078438 ~ 26079115 (-)
G76706 NA non-coding upstream 442195 26087352 ~ 26102108 (-)
G76707 NA non-coding upstream 500472 26145629 ~ 26146804 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 335204 25282789 ~ 25301768 (-)
G76424 NA other downstream 452503 25184209 ~ 25184469 (-)
G76377 NA other downstream 716607 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 838356 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1376442 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 1211472 26856629 ~ 26878862 (-)

Expression


Co-expression Network