LOC111193118


Basic Information

Item Value
gene id LOC111193118
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26683888 ~ 26685678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103618
GGGCTCGCGACCTGCGGACACACGCACACGtttcctccacacacacacgtatccTACACACCCTCTCGCTCGCGGGCGCTGGTGTGGAGCGGTGAAGCGGCGCTGATGGAGGGTCTTGTCGGCTGCTGCCATGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTTGGGATGTGAGATTGCCCGCTATGGAGGTGACTGCGCAAGCTACTGCCTTGCCAGTGCTGGTGATCAACTTCAGCGTGGACTAAAGACACGGACTACTTCGTTATTCCAGACTGGAAACCAGAACGACCCTCAAACATCACTTGTGCCCCAGTGGTCGACGCCTCTCCTGGTCTACTAGTGAGGAAAATCAGCTGCTGATGCATcAGCTCCAGGCGGACCGGTTCAGTGTCGCTGTGAAGAGAAACCTGACCTTTCCTGCCCATTATCTGGGCGTAGCTGTGGGCAGTAGCTGCACGGCTGCAGGTGACTCATTTCTGAAGAGGTGTTTTATTAACTATGTGACTGGGAATTTGAATGAACTGGGGATTAAGCTGGAATCTGGTTGGGAATTTGAATTATGAATAGACTGGGAGTTTGGGATTTGGGGTACCTGGTTGGGAATTTAATTAAATAGGCTTTGAATTAGATTTGTAAGGGATGAAGTAATAAGATGACGATTTATCATGGATCTGGCAGTCTGGCTAGGCTGGGAATCTGGTTGGGCATTTGAATTAATATGCTGAATATTTATCAGGGATCTGGGAATCTGGTTGGGCATTTGCATTAATATGCTGAAGATTTATCAGGGAAGTTTGAATAAAAAGGCTGGGGTATGCCTAGGAGCTGGGAATCTGGCTAGGGTGGGAATTTGGCTAGAATTTTGAATTGATGAAGGTATTTGTCGGAGAATTTGAATAAATAAGATGAAGAATTCTGAGAAATCTGTTAAGGAATTTGAATCAATAGGTTGAGGGATTTGTCATGGATTTGGAAATCTGCCTAGAAATCCAAATCAATATGCTGGGGAGTTTGGctggaaattaaaataaacatgctTAAGATTCATCAGGGATGTGAAAATCTGACTCGAATTTTGAAAAAGAAGACTAAGATTTATCATGCAATTGGGAATCTAATTGTAAAGTTAAATTAGTAGGCTGGTGATTTGTTATGAATCTCAGAATATGTTTGCGATTTTGAACATTCAGTGACTAAGCTAAAGATTTGTGAGGGGGTGGCAATCTGACTagaatttttaataaatacgCTGAAAtttatcataattattattattcaaattaATAGGCAGTGGATTTATCATTGGAATGTGTTTGGGAATTTGAAGGGGGAGTTTAAGGAGTTGAAAATTAGCATTTATTAAAAGGCAGTCCGTCAGTTATGCTATGCTGTAGGCCTATAAAGTTGTAATGCCCAGTC
>XR_002650279.1
GGTGTCTAGCATTAGAGTGTAGTACACAATTGAGACGCGGCCCGCCTCTGACCGGAAGAGGGATGGGCGGGGTTCTCTTTCATTTCATTGGCTCGATCTCCGACCAATCGTtgtgtgaggagagagagtaCCCCGCTCCACAGCTACAACCGCGagcctgctgctgcttctcagcGGGATGGGCTCGCGACCTGCGGACACACGCACACGtttcctccacacacacacgtatccTACACACCCTCTCGCTCGCGGGCGCTGGTGTGGAGCGGTGAAGCGGCGCTGATGGAGGGTCTTGTCGGCTGCTGCCATGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTTGGGATGTGAGATTGCCCGCTATGGAGGTGACTGCGCAAGCTACTGCCTTGCCAGTGCTGGTGATCAACTTCAGCGTGGACTAAAGACACGGACTACTTCGTTATTCCAGACTGGAAACCAGAACGACCCTCAAACATCACTTGTGCCCCAGTGGTCGACGCCTCTCCTGGTCTACTAGTGAGGAAAATCAGCTGCTGATGCATcAGCTCCAGGCGGACCGGTTCAGTGTCGCTGTGAAGAGAAACCTGACCTTTCCTGCCCATTATCTGGGCGTAGCTGTGGGCAGTAGCTGCACGGCTGCAGGTGACTCATTTCTGAAGAGGTGTTTTATTAACTATGTGACTGGGAATTTGAATGAACTGGGGATTAAGCTGGAATCTGGTTGGGAATTTGAATTATGAATAGACTGGGAGTTTGGGATTTGGGGTACCTGGTTGGGAATTTAATTAAATAGGCTTTGAATTAGATTTGTAAGGGATGAAGTAATAAGATGACGATTTATCATGGATCTGGCAGTCTGGCTAGGCTGGGAATCTGGTTGGGCATTTGAATTAATATGCTGAATATTTATCAGGGATCTGGGAATCTGGTTGGGCATTTGCATTAATATGCTGAAGATTTATCAGGGAAGTTTGAATAAAAAGGCTGGGGTATGCCTAGGAGCTGGGAATCTGGCTAGGGTGGGAATTTGGCTAGAATTTTGAATTGATGAAGGTATTTGTCGGAGAATTTGAATAAATAAGATGAAGAATTCTGAGAAATCTGTTAAGGAATTTGAATCAATAGGTTGAGGGATTTGTCATGGATTTGGAAATCTGCCTAGAAATCCAAATCAATATGCTGGGGAGTTTGGctggaaattaaaataaacatgctTAAGATTCATCAGGGATGTGAAAATCTGACTCGAATTTTGAAAAAGAAGACTAAGATTTATCATGCAATTGGGAATCTAATTGTAAAGTTAAATTAGTAGGCTGGTGATTTGTTATGAATCTCAGAATATGTTTGCGATTTTGAACATTCAGTGACTAAGCTAAAGATTTGTGAGGGGGTGGCAATCTGACTagaatttttaataaatacgCTGAAAtttatcataattattattattcaaattaATAGGCAGTGGATTTATCATTGGAATGTGTTTGGGAATTTGAAGGGGGAGTTTAAGGAGTTGAAAATTAGCATTTATTAAAAGGCAGTCCGTCAGTTATGCTATGCTGTAGGCCTATAAAGTTGTAATGCCCAGTCATTTTGACAGTATGAACTACCAAATCTCTTATTAAAGATTTGCATCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103618 False 1423 lncRNA 0.43 2 26684068 26685628
XR_002650279.1 True 1653 lncRNA 0.44 2 26683888 26685678

Neighbor

gene id symbol gene type direction distance location
mon2 mon2 coding upstream 113173 26515189 ~ 26570715 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding upstream 169867 26490615 ~ 26514021 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding upstream 199707 26475507 ~ 26484181 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding upstream 397446 26236780 ~ 26286442 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding upstream 630774 25860529 ~ 26053114 (+)
LOC103031630 LOC108412538 coding downstream 206198 26891876 ~ 26958394 (+)
LOC103032468 cln6,LOC108412537 coding downstream 282958 26968636 ~ 26982403 (+)
LOC103032770 calml4 coding downstream 300866 26986544 ~ 26999262 (+)
G76838 NA non-coding upstream 3998 26679640 ~ 26679890 (+)
G76833 NA non-coding upstream 112489 26571180 ~ 26571399 (+)
G76655 NA non-coding upstream 537136 26145625 ~ 26146752 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding upstream 590695 26087189 ~ 26093193 (+)
G76536 NA non-coding upstream 970038 25713432 ~ 25713850 (+)
G76931 NA non-coding downstream 314516 27000194 ~ 27000955 (+)
G76939 NA non-coding downstream 361907 27047585 ~ 27047821 (+)
G76464 NA other upstream 1387420 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 1402517 25271256 ~ 25281371 (+)
G76423 NA other upstream 1499156 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 1679373 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 1700174 24974941 ~ 24983714 (+)

Expression


Co-expression Network