LOC111193067


Basic Information

Item Value
gene id LOC111193067
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 845025 ~ 855158 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU94937
TGCAGGATCCTGACTCAGACGCTCATTCTGGCTCTGCATCTCATCAAGCAGCTGCCCAGAGACCCTGTGTTCCTCTAAACcttattttctttcattataTACTTTTACTAAAGGCTTCAGGATGAGAAGAGCTATCATCGGAGTGGTCGCAGTTATCGGATTCTTCGCTCTGGCGGAGTCTCTGACCTGTAATACGTGCTCAGTGGGACTGGTAGGAATCTGTCTGAATCCATCATCCAGCGTCTGCAGCTCCAACTCCTCCAGCTGCTTCACTGGAAGAGCCAAGTTCCCGGCGATCAGCGGTTTCTCTGGCTTCAATTCTCAGGGATGCCTCGACTCTACTCAGTGTAACGCCACCATTAACGGCACCATCCTGGGCGCCACTTACACCATCTCTCAAACCTGCTGCAACACGGACAAGTGTAACCCCGTCCTGCTCAGCGGCGCCCCCTACATGCAGCTGTCTCTGCCCGTGGCTCTGAGCACCGCCCTGCTCGCCCTGGTCTGGAGCAATTCCATctattaaacaatttaaattcCTTTCAAATTTCCAATTTCCTACATAATCTGCTGTTATATGACTAATATttcaaatattacataaaaaaaaaaccttaaacaaTGTATCTACACTGTTTACTAAAATTAATACAACATAAACACAactcaaataatcaaataacattaaagctccactaggtaggattgagattttgtgctcgtgggctccccctacagttatagagtgtaataaatgtttcaggcggattagtttctctttctcgttttttggcttttacagacatattcggtctcttcccatcttctgccagagtgtctttatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcaggtcgcagttctcgcgagcgttggtcacggccgcctcggaaaacttacagagtctggtttgagctcagaggagctccggcacaggagacacgagagcaccactattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagataaaaaatcaaggaaatcctacctagtgctgcttcaAAATAGAAGGTTCTTTAAAGAATGACTTTTGTAAATTGcaaattattgtgttttttgttttgtaaagaaagtAAAGAATATTTGCCTAATGTAAATTGtctcaagttttttttgtttctttgttttatagaATGATGCAACAGTATCATTAAATCAtttgctgaataattcatactggttatGAAGGCAATAGGTTTATAATTTAGTATCTCAAGTTTTAAGTTCATTCTTTTACCACAGTTCATACTggatatcatcgctgtccaatgaaaaacaagcatctctacttttgttcattttttttttatttcataatttgaacacaaaacTTAATCGATGTTCTTTAATCTATGTGAAATtccttgatgaatggaccaatagaaatgatccaaatttacctgaaataaatgatttttatattGCCTTCCATTGCATTGAAACTCCTttaaaagttgctgttttggagatagaTGTTTTTACATGGACAGCAAAGTATGAAATCCTAAGATTAACATCTAAGTAGTTATAGCATGTTCATACTGGATATGAAAGTCCTTAGATCAACAACCAATAGttacagaatattttatattcttgtaTCATACTGGATACAAAGATTTAAAAATGAGTCTCACTAATTGCAGagtaattcatactggataataAATCATAAGATTAAAAATGAAGTAGTTACACTATGTCActgtatagtagatactgaatagttCATACTGAGAAAGTTTTACAACAACTGAATTATATTAGTCTCTAAATTGTCTCATAGTAGTTACAGGACAATTCCCATTAAACTAGAAGTATATTAAATAGTCTCTTAGTGTTagtaaaattcatactggataataACTGAGTAGTTAAGTAGTAGATAAGTAGTTACAGcaaattatacaacagttagttccgacctcacaatctaattggttgagaagtgttctagccttctcacactaaacctgtatcacgcCGCcaacgcgttgccgagtaacggcgtatatacacaggacagcttagaatcatcaactgtatcagcagcagcgttagcttagcacaggctagcgctcagccgcggcacgctcgcccgcagcgctggctcgtcttttgtggaaaaaagggaaagaaaatcgctcggttaatgccgtctgacagccag
>XM_022671940.1
GGCCTAGCCCCCCCTGGAGCATATATCTGCAGGATCCTGACTCAGACGCTCATTCTGGCTCTGCATCTCATCAAGCAGCTGCCCAGAGACCCTGTGTTCCTCTAAACcttattttctttcattataTACTTTTACTAAAGGCTTCAGGATGAGAAGAGCTATCATCGGAGTGGTCGCAGTTATCGGATTCTTCGCTCTGGCGGAGTCTCTGACCTGTAATACGTGCTCAGTGGGACTGGTAGGAATCTGTCTGAATCCATCATCCAGCGTCTGCAGCTCCAACTCCTCCAGCTGCTTCACTGGAAGAGCCAAGTTCCCGGCGATCAGCGGTTTCTCTGGCTTCAATTCTCAGGGATGCCTCGACTCTACTCAGTGTAACGCCACCATTAACGGCACCATCCTGGGCGCCACTTACACCATCTCTCAAACCTGCTGCAACACGGACAAGTGTAACCCCGTCCTGCTCAGCGGCGCCCCCTACATGCAGCTGTCTCTGCCCGTGGCTCTGAGCACCGCCCTGCTCGCCCTGGTCTGGAGCAATTCCATctattaaacaatttaaattcCTTTCAAATTTCCAATTTCCTACATAATCTGCTGTTATATGACTAATATttcaaatattacataaaaaaaaaaccttaaacaaTGTATCTACACTGTTTACTAAAATTAATACAACATAAACACAactcaaataatcaaataacattaaagctccactaggtaggattgagattttgtgctcgtgggctccccctacagttatagagtgtaataaatgtttcaggcggattagtttctctttctcgttttttggcttttacagacatattcggtctcttcccatcttctgccagagtgtctttatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcaggtcgcagttctcgcgagcgttggtcacggccgcctcggaaaacttacagagtctggtttgagctcagaggagctccggcacaggagacacgagagcaccactattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagataaaaaatcaaggaaatcctacctagtgctgcttcaAAATAGAAGGTTCTTTAAAGAATGACTTTTGTAAATTGcaaattattgtgttttttgttttgtaaagaaagtAAAGAATATTTGCCTAATGTAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko04330 Notch signaling pathway
ko05200 Pathways in cancer
ko05224 Breast cancer
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU94937 True 2285 TUCP 0.39 4 845052 855158
XM_022671940.1 False 1239 mRNA 0.44 3 845025 854055

Neighbor

gene id symbol gene type direction distance location
LOC103036550 NA coding upstream 67019 640691 ~ 778006 (+)
LOC111193065 NA coding upstream 434803 404610 ~ 410222 (+)
LOC103044001 NA coding upstream 567828 257979 ~ 277197 (+)
LOC103044287 NA coding upstream 599029 228631 ~ 245996 (+)
LOC107197271 NA coding upstream 621528 203641 ~ 223497 (+)
LOC103042240 LOC103042240 coding downstream 12751 867909 ~ 877404 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding downstream 44736 899894 ~ 912522 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding downstream 102262 957420 ~ 972843 (+)
gpx3 LOC108415088 coding downstream 1835580 2690738 ~ 2701134 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 1973251 2828409 ~ 2854104 (+)
G70345 NA non-coding upstream 63288 741336 ~ 781737 (+)
G70355 NA non-coding upstream 75258 768928 ~ 769767 (+)
G70351 NA non-coding upstream 142539 700571 ~ 702486 (+)
G70330 NA non-coding upstream 314050 502689 ~ 530975 (+)
G70328 NA non-coding upstream 352441 492343 ~ 492584 (+)
G70366 NA non-coding downstream 8363 863521 ~ 937620 (+)
G70361 NA non-coding downstream 57895 913053 ~ 914183 (+)
G70372 NA non-coding downstream 95749 950907 ~ 957398 (+)
G70373 NA non-coding downstream 117732 972890 ~ 974277 (+)
G70374 rps5,LOC107086176 non-coding downstream 123405 978563 ~ 1019860 (+)
LOC103042548 NA other upstream 4811 794712 ~ 840214 (+)
LOC111193042 NA other upstream 524089 317331 ~ 320936 (+)
G70385 NA other downstream 150325 1005483 ~ 1005838 (+)
G70522 NA other downstream 413609 1268767 ~ 1269404 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other downstream 1233762 2088920 ~ 2193559 (+)
G70604 LOC108436838 other downstream 1503725 2358883 ~ 2359229 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 2266760 3121918 ~ 3292475 (+)

Expression


Co-expression Network