G70477



Basic Information


Item Value
gene id G70477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 913078 ~ 914249 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU95096
tatattattcctaaaaaaaagaaaaaaataatcttacactcacagagaaaagaaaaaacaaatttattgcctaaaaattacataatttcACTTGATAAAAAAGTAGTTTTTGCAGTGAAGAGATTGACAATGGGAAAAAACCTTCAATATAGCTGTGGGTATTGAGATACTGAAAAACACTCTTAGCCCCTCATTTGTGTTGTCTGtcttgtgtataaatatatttatagtcaGGTTGGGAAGATGGGCATTTCAGAACAATACAAcgacacagaaaaacaggctagTTTAACATAATAATCAACAGAAAGTAAAATTTTAAGAAATGGACAAACATTTTGGGCTGTAAGTGTATTAAGTGCATAACCCCAACCCTTTATCCCTTTATCACTGGCAATTTCACTCACAagctttgttttaataattaagaatGTTAACAGCATTAGCAGAGCAAACGCTGCAGCGCATTATTCAAcacacttggaggagaacactaatcaCCAGTTCTGTTATACCTATCAGCTAACAGGCTAGCCTAACACCCACACTGGTGAGCATCTTATTAGGTCAATGTTCTTTAATCCTGGCTCTGTTGCCCCTTGACAAGCACATTTTAGAGGATTACCTGCTTTAAACACAACCCATTGTAACTATTTAAGGGCTTAttaattagttgattagttaaatCAGGGTGTGCAGGTAAAGCCATACAATTGCAAGGGATGCTATGGTTGGAGAAAGATGACCATCCTAAGCTTCCAGAGTGAGTAAAGCTATGGCTGTGGCATCACCATTGATTGATCTTGCAAAGTCCTGAAGATAGAGAGCCCTAGGGTTCGTTCTTTTAAAGGACCGTGCTTTTAGAGGTCATTATAACCATAGTAGAAAAAGATAAATGATGCAGATAACTTAATTATGCGAATTTCAGGTTTTATGTCTATAAGCCAGTGAGCTGAATGATCtaacacacagaaatacagaaaaacagaaaatacggaaaatgtagaatataaaagtgtgaaatatccCTTTAAGAGCTTTTTGAAATGCAAACgttttataataaaaagtgtgtgtgtgattatataCAAGGgtttatacaggggttggacaatgaaactgaaacacctggttttagagcacaata

Function


NR:

description
zinc finger protein ZIC 5

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU95096 True 1147 lncRNA 0.35 2 913078 914249
Loading

Neighbor


gene id symbol gene type direction distance location
LOC103044579 NA coding downstream 716795 178319 ~ 196283 (-)
LOC111193040 NA coding upstream 17768 932017 ~ 938184 (-)
rps5 rps5 coding upstream 60846 975095 ~ 982603 (-)
LOC103041113 ppt2 coding upstream 74197 988446 ~ 1005877 (-)
LOC103026956 ctnna1 coding upstream 1083907 1998156 ~ 2220364 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 1521431 2435680 ~ 2488996 (-)
G70457 NA non-coding downstream 59473 845038 ~ 853605 (-)
G70455 NA non-coding downstream 72924 836229 ~ 840154 (-)
G70454 NA non-coding downstream 84522 826913 ~ 828556 (-)
G70443 NA non-coding downstream 131385 780327 ~ 781693 (-)
G70450 NA non-coding downstream 132903 779362 ~ 780175 (-)
G70489 NA non-coding upstream 106486 1020735 ~ 1020992 (-)
G70502 NA non-coding upstream 173594 1087843 ~ 1088144 (-)
G70508 NA non-coding upstream 201678 1115927 ~ 1117269 (-)
G70512 NA non-coding upstream 231534 1145783 ~ 1146014 (-)
G70515 NA non-coding upstream 249954 1164203 ~ 1164470 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other upstream 95637 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 1789946 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 2365907 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 2529846 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 2661312 3575561 ~ 3703751 (-)

Expression


G70477 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G70477 Expression in each Bioproject

Bar chart with 6 bars.
G70477 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network