CI01000009_03633868_03640910 (CDC16)


Basic Information

Item Value
gene id CI01000009_03633868_03640910
gene name CDC16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3633704 ~ 3640910 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03633868_03640910.mRNA
ATGAATCTTGACAGGCTTCGTAAAAGAGTGAGACACTACATTGATCAGCAACAGTATCAAAGTGCTCTGTTCTGGGCTGACAAAGTAGCATCCTTATCACATGAGGATCCTCAAGATATTTATTGGTTAGCGCAGTGCCTTTATTTGACAGCGCAGTATCACAGAGCCTCTCATGCGCTCAGATCTCGCAAACTTGACAAGTTGTATGGAGCCTGTCAGTATCTAGCTGCAAGATGTCACTATGCTGCCAAAGAATATCAACAAGCTCTGGACATACTGGACATGGAGGAAGCAGCCAGTAAAAGACTAATGGACAAGAATGTAAAGGAGGATAATGGCTCAAGGGAAACCGTAAAGGAATGGGAAATGTCTCCTGCCTCAATCAATAGTTCCATCTGTCTCCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTAGCCACGTCTAGCTACAAAGAGGCCTTGAAACTGGACGTCTACTGCTTTGAAGCCTTTGACCTTTTGACGTCCCATCACATGTTGACCGCCCAAGAGGAAAAAGATTTCTTGGATTCTCTGCCCTTAAGTCAACAGTGTACAGAAGAAGAAGTGGAATTGCTGCGTTTCCTTTTTGAAAATAAGTTAAAGAAGTATAACAAACCTAGTGAGATGGTCGTCCCAGATATAGTCAACGGTCTCCAGGACAACTTGGATGTTGTCGTCTCCCTCGCAGAGCGACATTATTACAACTGTGACTTTAAAATGTGCTACTCTCTTACATCAATGGTTATGGTAAAAGACCCATTTCATGCCAACTGTTTACCAGTGCACATAGGAACCCTCGTCGAGCTGAGCAAAGCGAACGAGTTGTTTTACCTGTCTCATAAACTGGTGGATTTGTATCCCAGCAATCCAGTTTCGTGGTTTGCTGTTGGATGTTACTACCTCATGGTTGGGCATAAAAACGAACATGCAAGGCGGTATCTCAGTAAAGCAACCACGCTGGAGCGCACATACGGACCGGCATGGATAGCATACGGTCACTCGTTTGCTGTGGAAAGCGAACACGATCAGGCCATGGCTGCTTACTTCACTGCTGCCCAGCTCATGAAAGGATGTCACCTGCCCATGCTCTACATTGGTCTGGAATATGGACTCACTAACAACCCCAAGCTGGCAGAACGTTTCTTTAGCCAGGCCCTCAGCATCGCACCTGAAGACCCCTTTGTCATACATGAGGTAGCTGTGGTTGCCTTCCAAAATGGAGATTATAAAACAGCCGAGAAGTTGTTTCTAGATGCTATGGACAAGATCAAAGCCATTGGAAATGAGGTGACAGTAGACAAATGGGAGCCGCTCTTAAACAATTTGGGTCATGTGTGTCGAAAATTGAAGAAATACGAACAGGCTCTCGAATACCACAGGCAAGCTTTGGTCCTCATCCCACAGAATGCCTCTACTTATTCAGCCATCGGTTACGTGCACAGCCTAATGGGAGATTTTGAGAGCGCCATTGACTACTTTCACACTGCACTTGGTCTTAAAAGGGATGACACATTTTCCGTAACCATGTTGGGCCACTGCATTGAGATGTATATCAGCGATTCAGATGCTTACATTGGAACTGACATTAAAGACAAAGTGAGAAAGACCCTCAGCACTCCTGCACTGATGAAGATGCTCAACACTTCTACCGACGGCAATGAGAGCAGAACACAACCCGTAGAAGAGGTGAATGTGTGCCTGGAAACTCCTCCTTTTAACGCTGACAAACAAACCGATGCGTTCCAGCGCTTCCTCTTAGAATGCGACATGCATGAGAGCGACATGATGCTGGAGACATCCATGTCTGACACCAGCACGTGATTGAGACCTGTGAATGGGTCAAAGAGGAACTTTGAGCATGAGATGATTAGAATGTGACTCTGAAGAGGACACGACACACAACCTCCCTCCCTCCCTCCCTCCGCCATCCCTGCCGTGTCCTCTGTGTTGGACCCCTGTGGATTTTTTTTTTTACAATGAATAAA

Function

symbol description
cdc16 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

GO:

id name namespace
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K03353 APC6, CDC16; anaphase-promoting complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03633868_03640910.mRNA True 2015 mRNA 0.46 18 3633704 3640910

Neighbor

gene id symbol gene type direction distance location
CI01000009_03622269_03631417 UPF3A coding downstream 2287 3621937 ~ 3631417 (-)
CI01000009_03614390_03616151 P2RY8 coding downstream 17085 3613791 ~ 3616619 (-)
CI01000009_03599584_03602070 ASMTL coding downstream 31634 3599349 ~ 3602070 (-)
CI01000009_03591700_03598877 SLC25A6, SLC25A5 coding downstream 34827 3591428 ~ 3598877 (-)
CI01000009_03582190_03582916 NA coding downstream 50259 3582190 ~ 3583445 (-)
CI01000009_03643048_03645741 DCNL2, DCUN1D2, DCUN1D2A coding upstream 1338 3642248 ~ 3647160 (-)
CI01000009_03664045_03666052 NA coding upstream 23037 3663947 ~ 3666737 (-)
CI01000009_03668956_03672426 NA coding upstream 27882 3668792 ~ 3672426 (-)
CI01000009_03699312_03715114 APP, APPB, APPA coding upstream 58402 3699312 ~ 3715114 (-)
CI01000009_03770045_03770497 NA coding upstream 129000 3769910 ~ 3770497 (-)
G52670 NA non-coding downstream 179154 3454343 ~ 3454550 (-)
G52639 NA non-coding downstream 226828 3406663 ~ 3406876 (-)
G52623 NA non-coding downstream 247644 3381984 ~ 3386060 (-)
G52606 NA non-coding downstream 331043 3300949 ~ 3302661 (-)
G52501 NA non-coding downstream 342881 3287318 ~ 3290823 (-)
G52725 NA non-coding upstream 6804 3647714 ~ 3647979 (-)
G52735 NA non-coding upstream 89990 3730900 ~ 3731251 (-)
G52736 NA non-coding upstream 90403 3731313 ~ 3731533 (-)
G52739 NA non-coding upstream 94913 3735823 ~ 3736139 (-)
G52743 NA non-coding upstream 102417 3743327 ~ 3743553 (-)
CI01000009_03261739_03262843 NA other downstream 371747 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 734297 2883688 ~ 2893975 (-)
G52410 NA other downstream 1071171 2551724 ~ 2562533 (-)
G52098 NA other downstream 2226077 1401932 ~ 1407627 (-)
G52828 NA other upstream 576510 4217420 ~ 4231469 (-)
G53515 NA other upstream 1861485 5502395 ~ 5505248 (-)
G55814 NA other upstream 4784911 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5217242 8856310 ~ 8860563 (-)
G59097 NA other upstream 8647307 12288217 ~ 12289518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding CM030128.1 CM030128.1 26869226 ~ 26881796 (+)