G70587


Basic Information

Item Value
gene id G70587
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2274428 ~ 2274856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95223
tgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggtgctgctggtgcttgagctgaggctgaggctggagcagcgggtgcagcttgagcaggcgcggcgggtgcagcttgagcaggcgcggcgggtgcagcttgagcaggcgcggcgggtgcagcttgagcaggcgcggcgggtctaGGAGCTCGTGACCTGGGAGTAGGCACAGGAGCAGAGGCG

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU95223 True 265 lncRNA 0.69 2 2274428 2274856

Neighbor

gene id symbol gene type direction distance location
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1301585 957420 ~ 972843 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding upstream 1361906 899894 ~ 912522 (+)
LOC103042240 LOC103042240 coding upstream 1397024 867909 ~ 877404 (+)
LOC103036550 NA coding upstream 1496422 640691 ~ 778006 (+)
LOC111193065 NA coding upstream 1864206 404610 ~ 410222 (+)
gpx3 LOC108415088 coding downstream 415882 2690738 ~ 2701134 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 553553 2828409 ~ 2854104 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding downstream 583039 2857895 ~ 2866216 (+)
LOC103025421 n4bp3 coding downstream 596720 2871576 ~ 2946729 (+)
LOC103047122 LOC108439803 coding downstream 783668 3058524 ~ 3081939 (+)
G70583 NA non-coding upstream 3297 2270880 ~ 2271131 (+)
G70580 NA non-coding upstream 36331 2237717 ~ 2238097 (+)
G70577 NA non-coding upstream 43483 2230475 ~ 2230945 (+)
G70575 NA non-coding upstream 50275 2223800 ~ 2224153 (+)
G70532 ctnna1 non-coding upstream 197125 1998119 ~ 2077303 (+)
G70588 NA non-coding downstream 24733 2299589 ~ 2299922 (+)
G70589 NA non-coding downstream 25947 2300803 ~ 2314866 (+)
G70595 NA non-coding downstream 68503 2343359 ~ 2355896 (+)
G70606 NA non-coding downstream 106400 2381256 ~ 2384149 (+)
G70611 NA non-coding downstream 128558 2403414 ~ 2403932 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 80869 2088920 ~ 2193559 (+)
G70522 NA other upstream 1005024 1268767 ~ 1269404 (+)
G70385 NA other upstream 1268590 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 1419270 845025 ~ 855158 (+)
LOC103042548 NA other upstream 1434214 794712 ~ 840214 (+)
G70604 LOC108436838 other downstream 84027 2358883 ~ 2359229 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 847062 3121918 ~ 3292475 (+)
G70846 NA other downstream 1102828 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 1134814 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 2082209 4357065 ~ 4441931 (+)

Expression


Co-expression Network