G70589


Basic Information

Item Value
gene id G70589
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2300803 ~ 2314866 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95226
GGGCAGTACTGGTTATTTACCCCAGATTACAAGCCAGACAAAAATGGAAGCCAAGTGGTAACAATAGAGGTTCAGAGGAAGCTGTTGCTTCATTCCTCTGACTAATAAACCTTTGTGTGAGAAGCTTATCAAAGTTTAAAACTCCACAAAGCttcttgtttttatattttttgttctgtttttgctttctgTCAATGAACTCATAAGGACTTCTATGGACAAATCTTGCAACCATCTATAACAATTCCACTGAAGCTTCTTTACAGCCAAACAAAGCTGCATTATTTCCTCACAGTTTCACTACATTTTACTATATCATCTCTGGATTTCTAAGGACATCTAAGGACTATTTCAGCCCGACCTGGTAATTATAGGAGCATTCTTGAACAGAAACCTGCTCCAGACCACACTCAGGCTTAGACTGCGGTGCCAGTTCATCAAACGGTGCTGGAGGAGCTTCTGGGCATCTGGTCTCTGAATGTGGTTGAGTGGCTCAGCCAAAGCCCAGACTTAATCCCCATCAAACAGCTGTGTAGAGAAGCGAAGACGGCAGATCACAGACTCTCGCCGTCCAGTCTGACAGAGCTGAAGAGGATCTGGCATGGAGAACTGGATAAACTGTCCAAATCCAGGTGTGCACAGCCTGTAGACACCTAGCCAAGAAGATCTGCAGCTGGAAAGGATGCTAAACATTTCTAACATCCATTACAATGTGTATAAACACTTCTGTAGATATGAAATTTCAGTTTCTGAGAAATTATGATTATATCAATTAAATCCATTCaaaattaaaactatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95226 True 799 lncRNA 0.41 2 2300803 2314866

Neighbor

gene id symbol gene type direction distance location
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1327960 957420 ~ 972843 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding upstream 1388281 899894 ~ 912522 (+)
LOC103042240 LOC103042240 coding upstream 1423399 867909 ~ 877404 (+)
LOC103036550 NA coding upstream 1522797 640691 ~ 778006 (+)
LOC111193065 NA coding upstream 1890581 404610 ~ 410222 (+)
gpx3 LOC108415088 coding downstream 375872 2690738 ~ 2701134 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 513543 2828409 ~ 2854104 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding downstream 543029 2857895 ~ 2866216 (+)
LOC103025421 n4bp3 coding downstream 556710 2871576 ~ 2946729 (+)
LOC103047122 LOC108439803 coding downstream 743658 3058524 ~ 3081939 (+)
G70588 NA non-coding upstream 881 2299589 ~ 2299922 (+)
G70587 NA non-coding upstream 25947 2274428 ~ 2274856 (+)
G70583 NA non-coding upstream 29672 2270880 ~ 2271131 (+)
G70580 NA non-coding upstream 62706 2237717 ~ 2238097 (+)
G70577 NA non-coding upstream 69858 2230475 ~ 2230945 (+)
G70595 NA non-coding downstream 28493 2343359 ~ 2355896 (+)
G70606 NA non-coding downstream 66390 2381256 ~ 2384149 (+)
G70611 NA non-coding downstream 88548 2403414 ~ 2403932 (+)
G70608 NA non-coding downstream 120113 2434979 ~ 2436078 (+)
G70618 NA non-coding downstream 183783 2498649 ~ 2504305 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 107244 2088920 ~ 2193559 (+)
G70522 NA other upstream 1031399 1268767 ~ 1269404 (+)
G70385 NA other upstream 1294965 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 1445645 845025 ~ 855158 (+)
LOC103042548 NA other upstream 1460589 794712 ~ 840214 (+)
G70604 LOC108436838 other downstream 44017 2358883 ~ 2359229 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 807052 3121918 ~ 3292475 (+)
G70846 NA other downstream 1062818 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 1094804 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 2042199 4357065 ~ 4441931 (+)

Expression


Co-expression Network