tnip1 (tnip1,LOC107594924,LOC107750363)


Basic Information

Item Value
gene id tnip1
gene name tnip1,LOC107594924,LOC107750363
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2704195 ~ 2745072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95334
GTGGAATTTCCCCGGTTACGCCGCGTTTCACGGCTCGGATCGCGATTCGCTGCGACGCACGGCGACGACAGGGAAGCATGTTAAGCGAGTAGGCGGATATGGACGGAAAGGGCCCGTATCGGATCTATGACCCCAGGTGGGAGCGAGAGTCAGGCCAAAGAGGAGGCCAGCAGCTATCGGCAACTCCTGGAGGAGAACAGTGTCCTGAGAGAGCGTATGAAGGGCCTGAAGAGCCTGGGAGACCTGCTGGAGGAGTCTCAGACCGAGGCGTCTAAACTGCGGAAGCGCGTGGAGGAGCTGGTCCGGGATAACGAAGCTCTGAAGTCCTCCACCTCCAGCTACGCTTCTAATGTGTGTATGGGAGCGCCTGTTCAGACGGACACACAAGGTCATGGGAAGCTTCTCAGTCACCCTGCATCCGTCAGAGCTGACCCTCGCGAGTGTTTGACTGTAAAAAGCGTTCAGCCCGAGGCAACCgaGCCGTCCTCTCAGTTTGAACTGGTGAACATGGAGGACAAGACGGCCACAGAGACTCAGACGGTGAGATGTGGGGATGTTTGGGAGGGTCTGGGAAGGGATCTTTTAGTGTGTCGGTGTTCTTTTAGTATGTTTCGGAGAGCATATAGAAAAGACCCTCACGCT
>XM_022671946.1
AGCATGTTAAGCGAGTAGGCGGATATGGACGGAAAGGGCCCGTATCGGATCTATGACCCAGGTGGGAGCGAGAGTCAGGCCAAAGAGGAGGCCAGCAGCTATCGGCAACTCCTGGAGGAGAACAGTGTCCTGAGAGAGCGTATGAAGGGCCTGAAGAGCCTGGGAGACCTGCTGGAGGAGTCTCAGACCGAGGCGTCTAAACTGCGGAAGCGCGTGGAGGAGCTGGTCCGGGATAACGAAGCTCTGAAGTCCTCCACCTCCAGCTACGCTTCTAATGTGTGTATGGGAGCGCCTGTTCAGACGGACACACAAGGTCATGGGAAGCTTCTCAGTCACCCTGCATCCGTCAGAGCTGACCCTCGCGAGTGTTTGACTGTAAAAAGCGTTCAGCCCGAGGCAACCgaGCCGTCCTCTCAGTTTGAACTGGTGAACATGGAGGACAAGACGGCCACAGAGACTCAGACGgcTGGTGTCCTGCCCTTACCGCAGGAGAATACAGAGCTGGCCAGTCAGCTGCAGCGGCTGGAGAGCTCCTTTAGCGTGTTTGCAGAAGAGTCCAACCCCAATCAGCTCCTGGCTCACCTGGGACGCATGGCTGTGGAGTTCCACCACCTGTCCTCTAAAGTGCAGAAGAATGAGCAGAGAACATCACTGCTACAGACACTTTGTGAGCAGCTGAGGCAGGAAAATAACGAGCTTAGGAAAAAAATGGAGGAGGACCTTCAGTATCGGAATCGTGACCTGGAGCAGCTCAGgcAGGAGAATCTGAAGCTGAGGGAACAGGTAAACGGAAAAACGGAGGCGGTCCAGACCGAGTCACCTGAGTCCAAAGAAGAGCCCAAAGAGGAAGCTACAAAGGCCAAACTGGAGATGGCCATGACTcagcagGCTGGCAAAACTGTGGAGAAAACCCCGTCCAAGACCCTGGACCCAGAAGTGTACGAGAAGAAGATCAGGCTGCTGGAGAAGCAGAGGAGAGACGTGCTGGAGGTAAACAAACAGTGGGACATTCAGTGGAACTCGATGAAGGCGCAGTTTGAGCAGAAGATTACAGATCTGCGGCAGCGGCTGGCAGACTCCCAGAAGGccgtgctggagctggaggctgAGAGggagcagagacagagagactacGACAAGAAACTGCTGCTGGCCAAATCCAAAATCGACAATGTGCAGgGTGAAAAGGAGTGTTTGACGTCGGAGTCCTGTGAACTGAAGCAGAAGGTTCGGTACCTGCAGGATCAGCTGGTTCCTCTGACTAAACAGCGGGAGTACCAGGATAAGGAGATCCAACGCCTTAACCGGGCTCTGGAGGAAGCGCTGAATCTGCACACTCCTGCGGCTCACGCTGGGACGAATCTGGGAGAGGGAGTTCTAAACCTGCGTCAACAGGAGCTTCACACACAGATCGCTGTCCTCAaagagcagGTGAAAATCTTCGAGGAGGATTTCCGGAAGGAGCGCAGTGACCGGGAGCGAATGAATGAAGAGAAAGAAGACCTGAGGCGGCAGGTGGAGCGGTTACAGGGTCAGATGACCAATCTGACCAATCAGctCCATCAGGCTCAGAACgagtgtcagagagagagggcagaGCGATGTAAACTGGAGAGACTGCAGATGCAGCATAATAAGCAGGGGCAACCAGAGCGAAGGACGTCTGACCCCACTTCAACCGCACCCAATGGCCCCCTGAGCCCACCGTACTGTGGCCCCTTTGTGCAGGTGGGTCACCAAGGCCTCGAGGCCTGGCCCATCCACTTCCCGCCCAGAATGCCCACGCTGAGCACGGCACCGGGCCGAGATTTCCAGCCTGTCAACCCGGGTTTTCCTTGGCAGTCATCATTCCCTCAGCCACGGGGTTCCAGAGGTCAACCAGATCCAGCAAGAGCTCCTCCAGAAAATGCAGAAGCAGGAGCAGCCGGCTTTGGGAAGCGCGATCGTCAGAATGCTGCGGACCCTGGAAAGCACTAACCACCGCTTCAGCCCCGCTCCACTGGCACCCAGCTAGTAGCATGATGCCATTTATCTTTCTGTTGGCATGGTGtgaaaaaactttctttttttgttgttgtagtttgttttctttgtttttgtttgtttgtttgtttttctttattcccccccttagtgtgtgtgtgtaagtatgtatgtatgtatgcgtGTGTGCACGCGCAattgaatgtatgtatgtatgtatgtatccgtgtgcgtgtgtatgtacatatataaatatctatCTCCTTCTGACGAAATGTTGTTTATATAATTAAGTTTTATAAGCCTATTGTGAAACACTGTTCTGGCAaattctgaatatatatatatacagtatatataacgtatatatatatacatttattatgttACCTTTTTAATATTAAGGGTTAAACTCTGCTTTATATACAGCAATTCTATGCAGGAACTGAAGTCAGAAATTTAATGGATGAAAGGATGAAAATAATTCAGTAAGACAGTATACCTGCAGAGTTCAGTGAGGACCAGTATAGAAATGAAAAAGCTTATTTAATTGTAAGTGATGGTACCTGATAGTACTGGTGGTTTAGCAGGAGTACGGCCTGTTTGCATTGGGAAATAAACGGTCTGGTTAATGTAAAGAGCTGCTTTCTGCAGTTGggatgtatttttgtgtttttggagaTCCGCTGAGAGCTGGTCTGATTGTGAAATATAAAGCAGCAGTGGTGTAAATCCCGCTGTCCTGGAGCTCTGTAGGTAAATTGTCTTGCTAATGTTCCACAGTAGAATGTATCTCTATTTATTCAGTGGTCCGAGTCGTGATGGCCACTCGTTATTCTGTTTAATGCATCCACACGCCGGTTACCGAGCAGTGACCGAACACCCATTCAGTACACGTCATTTCCTAAAGCCATATACAGCACTTCTCAGCCTGCTCCACGCCACTGAAACCCAATCATCACTGAGAGCGTTTACATGCACTAAAAAAATCCTGTTCATAATCAGATGAGTAGTATGATAAGTAGCAATCTGATAAAAAAGCTGGATTTTGCTCAGTAATGGTATTTCTCAGTTCATATAAACTCTTATCTGGAGTATTCTGCAAGTCCTAATTCTGCGCCTGAGTGAAATCTATGGAAGCCCAGTTTTGCcacttgaaaaaataaaataaggatcaTCTATTAAGTCGTAATAATGAGATACTAAATCCAAAAGTATGAAATAtcaagtcataattatgagatattattaataattatcacttagtatctcataataatgactttgcatcttgtaattatgacttagtatctcatagtTATGATTTGCTATGTCATAATTAGGACTTGCTACTTCGTAAATATGCCTTGGTATCTCATTGTGACTTACTATCTCGTAATTATGAATTAGCATCTtgtaataatgacttactatctcataattgaCTTAGTGagtcataattacgagatgctaagtcataaaTACGAGATAAGTCATAATAACAAGATGCTACCTCATAATTAAGACTTACTACCTTGTAATTATGACTTATTATCACTTATCTCGTAATTGTGATTAtctaaaaattatgatttagtaTCTCTTTTCATGACTTGATATCTCGTAagtatgacttactatctcataattaagACTTACTACCTTGTAATTATAACTTAACATCTCGTAATTTTAATTTGGTATATCGTAATTTTAATTTGGTATCTTGTAATTATGACTTGGTATCTCGTAgttatgacttagcatctcattaTAGTGTCTTgatatctcataattatgacttaattCTGAGTATCTGGgtggaaatgggcttccatagaagACAGACCCTGGTAGTGGAAATAAGCGAGTAGCGCGAAGCAAGAATCTGATTATTGTCAGACTCATGAAAAATGTTGTGATTTCCCATAAGTTCATGTAAACAAGCTGatcaaattactaaaaaaagatgttttgtAGTAATCTGGTAATGAAATGCATGTAAACGCACTCAGTGATGAGCTTATGTCGTTCAGTACGCAGTAATCactcaacaaaatgaaaaatttggGAGATTGGTTTTCAAGAGCTTAGTTTAATCAATACTAGCAGTGAtacttttctaaaaataaaaaaggtgacTATTTGAAGGGAATCTGCACcaaatttgaatttgaaaatgtgttttaatataatgtgtGATGTTTGAGTCAAAAGTACCTTTTATTTAGTCTAgtttaatgaatacatttaagatgtaaataaagcatttcagtgtgggtttggtgtgaaatacTTCGTTCTTAACAAACTAgagagtcagaattgttcacAGTGGTGATGAATAAAACGAGACCTCCTAAGCCTCAAAGGCTCTGTCCACacatatctggatatttttaaaaatagacatttttctctctttgtttttgaTTCAATTcgatttacatttattcatatgTGTAAATCTGAAATCCAGTGCTTACTGTTTGTAGACACTGTAGTTTTGTGCCCTGTGTAGTTCACTATATAGTGAGTAACAAGGTTTTTCAGATTTAGAcagatgtcatttttttaagtgaaaaaaatgcatttttatttcaaCCAGAGCCAAAAccttagtttttaaaaatatccgtATATGTGTGGACTGcatctaaaatatatacaattatttattctGTGAAATGATTATGAATATGCAGCCTAATTTCTGAgatattatttactttattaattgTTGTCAGAAGGTTCTTacccaaaatgtttttgtttgtaataTTTGCATTGATTAGAAGCGTTGTAAGTAAAAAAattaccagaaaaaaaacaagttttgttttctttttgttgttttttttccatacagATTTACACCATTTTTACTTAATCGACAATACATACAAAACTCGGAAGACTGGGTTCACTGGTGGGTTTGGATAagtgctgcacaatattggattTTTTGTTGAAGATTTCCAGATTCCAGAAGTCAGTTATCCAACATATATTAGCATGTGGATGTGGATATTAGCAGTGCTCATATTGTACGTACACTGATTATTGGAATAAAGTAAATGATACTAAACAGGTGTAGTTGACCTCTGATAGATACGTcagaaaatacttaaataatacctaaaaaatgtacttaaacaAGAAGTAGCAGCAGGGAAAAGAGGTTGTCTTTATAATATGCCCTATTCGCTTTCATCTGAACTGTTTATGCTCTTAAACTGATGCTCGTTCACTTAAGTGCagcgcttcacatgaagtttcggtttcatcagTTCCAGTGATTGACAGCTGGGCTCATCCTTGTGATTGCATTTGAGCTTTCTGTAAAAACAGCTCATTATTcgcttattttgtattttcctTTGAAGCTGCTGCCACTCCCTCCTGTGGCCATATTCAGCCATTTCATTTGAATCGCAGAGGGGTTGTGACACAAGGTTTGTAAATTAGTTGGAACAGATACGTTCGCTTTCCTCACTAAAAACACCACTGAAGCCCTCACTGCTGTTGCCCATTTTCCCTCCTTCTCACTGCCTCACTGATTTCTGTCTTCTTGAGGTAAAATCATGTGAATTTTGATTTGAATTCTCTGAAATCGTATATATGTATTGGCAGGAGTTCTTAactaaagttttgttttttttaattttcatttctttttttttaaaggtctcattttatcatttttaaattaatattaatattgtaaaatattttagaaagtctagttgtggtctagTATAACTGAAAGCCATGTGagatgttttttgtaaaaaaaaaaaaaaaaaaaggtgcttaggtgtttctgtttagccctgctttagatcactgaattagaggtctatgaagaaagacaggttttgggCTCTTGCCCAAATATAtcgcttctgattggctaacagcactgcagcagagaatgccCACCTGCCTTTCTTCCCTAATCGCCCCCAAACCCCCCATGTCCAGGTCCAAAAGGGTTAAAGTGTTTTTGCTGTTAACACTCATGGTTCCCGTGGGTCCTTAAAAGTCtgaaattgtcttaaattttcCGTAAATTCCATAAAATTAGCCAGTGCGTTCAATGCCGGTGGGAAAACACGTACTAAATTTGGGGTGAGTTaccggagagagaactaaggttagcatagagctagctaactttagccacgagctagctaacgttactggggagataactaatgttagcaTAAAGCTGGCTATCTTTAGCTGCGAGCTaactaacgttactggggagagaactaaggttagcataaaGCTGGCTAACTTTAGCTGCGAGCTaactaacgttactggggagagaactaaggttagcataaaGCTGGCTAACTTTAGCTGCGAGCTaactaacgttactggggagagaactaaggttagcataaaGCTGGCTAACATTAACGGCGAGCTaactaacgttactggggagagaactaaggttagcatagagctagctaatatgttaacatgttctgcatcactatggaacaaaattgaaaaagaaaattggTCATTTTTGAAGATTGTTACGTTTTAATTTTCAATAAAATCATTTGTTCTCTACTTAAGAAGTTATGACTACATATTTGGgcattaaattttattttttggcgtcttaaaaagcattacatATGACTTTTAAAAATGGAGCAAGAACCCTGTCACTGTAACACATATGATTAACACACCTGTTTCACatatttgggccacttttacctgctgtgtttGTGAACAAAGCCATTTTAGTACCACATTGTTCCAGTCACCACCACTCACTGTAAACAGGTCTGACTGGTAATTATCTCTAGAATGGAGCTTTTATCACTAAAACCCACTCTGAATTAGTCCTAATTTAAACCCAGTTTACATCTAAACCACTGAATTCTTGCAGAAATGTGTAGAAACCAGTGGTTTTCCCCTTGTTTCCTGGTTCTGTAGTGGATTTCTACTGGTGTAAACGAGTGTAAATGAGTAAAAGAGATGGGCCTCAAACTCTTTTCTAATCTATAGTTTCTAATCTTTCTGCATTTGCCTTGATAATACTGATGATGACTGTATGTGGCTCATTGTGTTAGTAatgctgtgtttgtgtactgtgtgtgtgtgtgtgtgtgtgtcacttaTATACATACTGTAGCTGTGTGAAGATTGCTGGTGTGACTGTTTCAGCTGATGTATAAAGTGTGGgccaaaaaacattatttataattaatattttattttataattaatattttccccTGTGGAAGCAGTTTATCTGTCCACCAGTCTGTCTGTGCACCTTTACCCTGTCATTTAGGACACACCAGTGCATATTCATCCCATAATAATCCAGTTTAAAGGTGAATGGGTTCAAATATATA

Function

symbol description
tnip1 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within MyD88-dependent toll-like receptor signaling pathway; negative regulation of ERK1 and ERK2 cascade; and regulation of inflammatory response. Orthologous to human TNIP1 (TNFAIP3 interacting protein 1).

NR:

description
PREDICTED: TNFAIP3-interacting protein 1 isoform X1

GO: NA

KEGG:

id description
K23829 TNIP1, ABIN1; TNFAIP3-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU95334 False 642 TUCP 0.57 5 2735868 2745072
XM_022671946.1 True 7379 mRNA 0.41 18 2704195 2742373

Neighbor

gene id symbol gene type direction distance location
dctn4 dctn4,LOC107749746 coding downstream 25290 2661511 ~ 2678905 (-)
LOC103022920 NA coding downstream 168214 2500988 ~ 2535981 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding downstream 215199 2435680 ~ 2488996 (-)
LOC103026956 ctnna1 coding downstream 483831 1998156 ~ 2220364 (-)
LOC103041113 ppt2 coding downstream 1698318 988446 ~ 1005877 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 19073 2764145 ~ 2816535 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 213577 2958649 ~ 2982646 (-)
LOC103025117 NA coding upstream 236975 2982047 ~ 3019753 (-)
LOC103047641 c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736 coding upstream 278347 3023419 ~ 3027693 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding upstream 553138 3298210 ~ 3317552 (-)
G70666 NA non-coding downstream 490 2638562 ~ 2703705 (-)
G70672 LOC108415088 non-coding downstream 3061 2673139 ~ 2701134 (-)
G70662 NA non-coding downstream 87795 2569887 ~ 2616400 (-)
G70632 NA non-coding downstream 248731 2424036 ~ 2455464 (-)
G70629 NA non-coding downstream 269293 2419559 ~ 2434902 (-)
G70673 NA non-coding upstream 12071 2757143 ~ 2757834 (-)
G70691 NA non-coding upstream 21533 2766605 ~ 2766880 (-)
G70703 NA non-coding upstream 104878 2849950 ~ 2850374 (-)
G70728 NA non-coding upstream 134852 2879924 ~ 2880124 (-)
G70730 NA non-coding upstream 137410 2882482 ~ 2882965 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1669179 1009886 ~ 1035016 (-)
G70924 ndufb9 other upstream 535084 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 699023 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 830489 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 991554 3736626 ~ 3848624 (-)
G71175 NA other upstream 1666876 4411948 ~ 4413011 (-)

Expression


Co-expression Network