G70742 (rmnd5b,LOC106612137,LOC105026275,LOC107653309)


Basic Information

Item Value
gene id G70742
gene name rmnd5b,LOC106612137,LOC105026275,LOC107653309
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2958702 ~ 2962110 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95430
AGATACATAGCTGGTACTCTTTTGAGGAACGAGAGACGATTCTGATTTTCCTCTCCGGAAATTAAACCTCAGACAATTCTTCAATCAGacacattaaacaataaaaataataataaaaaaaaactttaaaattaaaaatcagcCAGTCCAATCACGCTTTTATTATATCATTACACCATCAGGAAGAGCGGCGCTATTCGGTTACAATCAGCGTCCTGCTTTCACCACAGGCTCAAAACGTCACCAACAAGCCCTCCACCAATCAACTCATGACCTTATTTCAATACTCTCTGTGAATCTCTCTGTGAATATACTTGCTAAAAAGCCACTTCTGTCATGTACACAGGCAGAACGCCCCATATATAGTCGTTTAAATATCTGGAAAGAAGCAACATACTATGCAAGAGGTCACACACCTGTTCACAAGCATACAGCCCACACTCTTCTTCAATAAGAGGTGGAGGAAAAAAACGAGGGTAAGGGGTTCAAATTAAAGTCAAATTAataaggagggaaaaaaaacgaaacaaatcagcacacacacacatatacttataaaagCCTGTGAGTCTGTCGTGAATGAGTGCGTATGAACAAATGATCCGCCGATATCTGTCCGTGTGACGTTTATCACTTACTGACTCGGATCTACAGGTGTGTGATGTAGTCATGACCACCGGCCTCTGCCAACTAAAAGCTTGGGAGGGGGGGAAGGGAGGAAGCGGCTCCACGGTTCGAGCCGCCACGCGGGGCCTCGCCGTGCCCATGAACGTGGATCATTCCAACTCAGCCAGTTCAGTCCACTCCAGCGAGCCTCCGACACCTCAGAGCCTCCGCCGCTTTAATCCGCTCTCCTCCCAAGTCAGAAGTAGATCTGCTTAGCGTCCGACGGGTTCTGCTCCATTGGGCAGTACGGGCACTTCAGCTTTCCAGCGTTGGTGAGTTTGTTGAGGGCATCTCTGGAGATGACGTGCCCACAGATGAGCTTCATGGGTGGGTTACTCTCTGACGTCTGCTGCCTCAGGATGGGACACGCAAACACTGAGTGATACCAGCACTTCTTCCCCAGGTCTATCTCAATCGGCAGCTCATCTTTGTGTGTCCAG

Function

symbol description
rmnd5b Predicted to enable metal ion binding activity and transferase activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of GID complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human RMND5B (required for meiotic nuclear division 5 homolog B).

NR:

description
PREDICTED: protein RMD5 homolog B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95430 True 1106 lncRNA 0.47 3 2958702 2962110

Neighbor

gene id symbol gene type direction distance location
LOC103025421 n4bp3 coding upstream 11973 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 92486 2857895 ~ 2866216 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding upstream 104598 2828409 ~ 2854104 (+)
gpx3 LOC108415088 coding upstream 257568 2690738 ~ 2701134 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1985859 957420 ~ 972843 (+)
LOC103047122 LOC108439803 coding downstream 96414 3058524 ~ 3081939 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding downstream 133774 3095884 ~ 3113634 (+)
ndufb9 ndufb9 coding downstream 385658 3347768 ~ 3353595 (+)
LOC103043978 NA coding downstream 458130 3420240 ~ 3439155 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 961862 3923972 ~ 3935104 (+)
G70740 NA non-coding upstream 2520 2954496 ~ 2956182 (+)
G70739 NA non-coding upstream 8797 2947454 ~ 2949905 (+)
G70716 NA non-coding upstream 11602 2946839 ~ 2947100 (+)
G70727 NA non-coding upstream 59093 2899302 ~ 2899609 (+)
G70726 NA non-coding upstream 59587 2898888 ~ 2899115 (+)
G70779 NA non-coding downstream 84282 3046392 ~ 3056964 (+)
G70819 NA non-coding downstream 312485 3274595 ~ 3276522 (+)
G70820 NA non-coding downstream 331349 3293459 ~ 3322968 (+)
G70821 NA non-coding downstream 343423 3305533 ~ 3306021 (+)
G70848 NA non-coding downstream 437233 3399343 ~ 3458582 (+)
G70604 LOC108436838 other upstream 599473 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 765143 2088920 ~ 2193559 (+)
G70522 NA other upstream 1689298 1268767 ~ 1269404 (+)
G70385 NA other upstream 1952864 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 2103544 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 159808 3121918 ~ 3292475 (+)
G70846 NA other downstream 415574 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 447560 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1394955 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1953703 4915813 ~ 4921820 (+)

Expression


Co-expression Network