G70820


Basic Information

Item Value
gene id G70820
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3293459 ~ 3322968 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95530
ACActtggttaaaaatacacacagatacagtaaGTACCTGATCAATCAGCTTCAATATCAATAATTCCTCCAGAACCAGATGATTGAGATCCTTCAAAACAGTCGAGCACATCAGGTGAGACGTGAGTCAAAGGATACGGAGTCTTTAAATATCGACCACATGAGGGAAAAACGCCATCAACAGCGTCTCATCACCTACGAGTTAGGagttattttttgcttttttgagaCGTCTGCACTTGTGCCGGCTTTCCATAACCAGATAAAGCTTAATCCTCGCCTGTAAAAGCTTTTCATTAGGATACAGCCACTGGCAAGGGAATTAGGAGCATTCTGTGATAAAAATGCAGCATGTTGATGATGCAAATTCCTACTGATGTCatacaaacatttatataaaaaagaaaacaagaaaacacgTAATGAGATGACGTCAGTGAGATGATCAGTGCTAGAATTTTAGCTCTTCAGACACAAAGTAGGAGCAAGAATGATGTATTTTAAATCGAAAATACATCTGAGCCTAATCTGTATCCAGAaaactaaattattaatatacatcatatgtccaaaagtatttagacaccccttctaatacCCCCCCACCCCTCTCCAAAAGtgttggaacagtgaggccaatccctttatttctgacgtagaataataaatatgagacaaaagatcaacatttcagtttttatttccaagtatttacatctggatttGATGCACAGTTTAGAAGATTCTGCACTGTTAGTCTGAacccacacatttttttgtgagcaaaagtattggaacggATAAACTAAAGTGAATTACTAGTGAATAGACTGACTAAGCATTCTTCTTTTCTTATGCCGTTTTAGGCTGTAAGCTCTCAAAatccgaggaaaacagcaaaacaacagtaatcggccctttaatcaggcattttaatggcttttaaaagggaaaataagagtgtttttccgggattaaaagcgtgcattcagctgtaactggaaatatctgcgctgcaaaactgtgctggagtGAGGAACAGCTTTCCAAATGTGTGTTTACTAGCATGTCCCCATCCATGTGGTTACCTCCTGCCCCCGCTCACGCGCCCCCTCCCCCTCTCGCtactcaggcagcagcagcctgtcactcacacagacacagagacagcgctgtgtatctacttcttgtgtcaagaatccaaacactgcaacatgacgtgtttgatttaattgcctgtaacgtcctgtgatgtgactattgcacatgcacacattacgatgacgatgcttaaacgatagtTTATGCAACCCTAACTGGGAGTGTATTAAATTCACCTTTATTAAAAGCTGGTGCAGACATTATTCATACAAATGCACTGAGCAATACAATGGGACTCTCATTCCAGTGCCAAGCATCATCtggatagaggggtataaatcccCCCACcttttgagctgtggagcagtggaactgtgtaaTTTGGAATGATGGAGGTCCATCCAGTATTTTGGGAAGAATTGGAGCGTATCTGTATCAACTTTAATATCATTCCTTAATCCACACAACAATGTTCGAACATCTAGTGTAAAGCCTTTccaaaagagcagaaactgttactccaacaaaaggaGTATTACAAAATATTTCGTACTGAACTCTGGAGGAGCAGGTGTCTATAAACTTTTGGACATATGgtgtatgtttatataaaactatagtGTTTATAAGATCACATCCCCACATTGAAAACAAAATGCATCTAATTTACATGACACATATATGGACATCCTTTCTACACTAATTAACTATATTACATCAACACAACAggcttttctatttatttatttattaattaattgagaactttccttcttttttttgggCTTAGGGTTCCAGTGAATATATCAGTCATATTTAAAATACAGTGTGAaaaagtaggcctgtcacaataattacattattgatttaTCATATAATAAATGGACACTACCTATATAATATTAGATAATCttgatattgtctattgtgtttatttaaatgtttgttcacatatataacagagaACAGTATTGAAGCCAGTCATGCTAaaaaagaagcggtggctgacttcagatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttggagcatcacgagtgatagggggagtcctagtagtgggtaattggccatgtaaattggggagaaaatgaaaaaaaaagtaggaaaaaaaatagaaaaagaaaaaacctatgattgttttaaatgttgttgtatttaaaagagtatgattgctttgttatgctatacTTTTATCTAGGGCTGcagctaatgattattttggtagtcgattaACCCGGcgattatttttcagattagtcAGCGTTTATTTCTGCCACATCCTTCATCTCTTAAAACAACAGAACAGATTTTAAGgtatttaaatgtctggatgttgtttaaacgtggtactgatatttagtgagtaaatgtgtaatctgttgtgtgtgggcacttttggagagacagactaagttgagtgtgaCCTGTGTGATTGAGCCATTTACTCATCTCCCATCGCACTTCTGTCCCCGTcattttgtgtaatgcagtacagttaaaaattaacgattagtcgacaattaaatttatagtcgacaaatttaaataatcgacattgtcgattatatcgattAATCGTTACAGCCCTACTATTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95530 True 2736 lncRNA 0.37 3 3293459 3322968

Neighbor

gene id symbol gene type direction distance location
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 179825 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 211520 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 346730 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 427243 2857895 ~ 2866216 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding upstream 439355 2828409 ~ 2854104 (+)
ndufb9 ndufb9 coding downstream 24800 3347768 ~ 3353595 (+)
LOC103043978 NA coding downstream 97272 3420240 ~ 3439155 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 601004 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 632040 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 809054 4132022 ~ 4215716 (+)
G70819 NA non-coding upstream 16937 3274595 ~ 3276522 (+)
G70779 NA non-coding upstream 236495 3046392 ~ 3056964 (+)
G70742 rmnd5b,LOC106612137,LOC105026275,LOC107653309 non-coding upstream 331349 2958702 ~ 2962110 (+)
G70740 NA non-coding upstream 337277 2954496 ~ 2956182 (+)
G70739 NA non-coding upstream 343554 2947454 ~ 2949905 (+)
G70848 NA non-coding downstream 76375 3399343 ~ 3458582 (+)
G70859 NA non-coding downstream 136987 3459955 ~ 3460502 (+)
G70860 NA non-coding downstream 137730 3460698 ~ 3478336 (+)
G70880 NA non-coding downstream 232548 3555516 ~ 3556070 (+)
G70883 NA non-coding downstream 275116 3598084 ~ 3599084 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 984 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 934230 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1099900 2088920 ~ 2193559 (+)
G70522 NA other upstream 2024055 1268767 ~ 1269404 (+)
G70385 NA other upstream 2287621 1005483 ~ 1005838 (+)
G70846 NA other downstream 54716 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 86702 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1034097 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1592845 4915813 ~ 4921820 (+)
G71247 NA other downstream 1633330 4956298 ~ 4980011 (+)

Expression


Co-expression Network