LOC111193071


Basic Information

Item Value
gene id LOC111193071
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3409670 ~ 3574758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95569
GTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCTGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCTGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGGCCTGGTGATCAGTGGGACCAATTGGCACGACAATATATGTGTTACCTGTGACAACTTCACAACACAAGgcTGGCCAACGCTCATCAAGCCTCTCCTCTCAGAGCTGTTGGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAATCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGCGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCAG
>TU95570
ctctctttctctctttctctctctctctctttctctcttaggCTGGCCAACGCTCATCAAACCTCTCCTCTCAGAGCTGTTGGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAGTCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGTGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCatcatgtaaaatatattattaGTGTAATACTGAACTTAATACTGATGTTGGTAGATGAGTTTCAATAGAAAAACAGAG
>TU95572
GTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCTGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCCGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGACCTGCAAGGGTCAGGAGAAACTGGTGATCAGTGGGACCAATTGGCACGACAATATATGTGTTACCTGTGACAACATCACAACACAAGgcTGGCCAACGCTCATCAAGCCTCTCCTCTCAGAGCTGTTGGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAATCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGCGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCAG
>XM_022671972.1
CAACAAACATTACTTAAACTTCCTCCAGTCTCCCCCTGGTGGCAGGCAGTGCTGGTTACAGGCGCGCGGCTGAACGGAAGCGCACGTAAAAGAGAGAAGTGATTGATGGTAATGCGTAACTTGAGAGACAGAGTTTCCTATTTAAACAGAGCAGATAGAGAGAGCAGCATCAATCCACCGAGACCGAAGCAGCAGGAGCAACATGACGCGCGCCTGGAATCTGTTCATCTTTTTGCTTTCTGTGCTCATCTGCATCTCCTCGCAAGAGGAGAGAACCTATGTTCGCACGCTGCCATCGGGGGCGAAGGTGGTGTGTGATTTCTGTCCGCCGGGTTCGTACCAGCGCTCTCCTTGCACGCTAACGCGCCCCACAGAGTGCCGCCAGTGCTGTGGCGGCTTTTACACCGAGTTCTGGAACTACGTCCCCGTGTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCTGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCTGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGGCCTGGTGATCA

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95569 False 590 TUCP 0.51 3 3412451 3574758
TU95570 False 385 lncRNA 0.43 2 3414503 3414915
TU95572 False 609 lncRNA 0.51 4 3412451 3574758
XM_022671972.1 True 694 mRNA 0.55 3 3409670 3414354

Neighbor

gene id symbol gene type direction distance location
ndufb9 ndufb9 coding upstream 56075 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 296036 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 327731 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 462941 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 543454 2857895 ~ 2866216 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 349214 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 380250 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 557264 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 731907 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 1283090 4857848 ~ 4884488 (+)
G70820 NA non-coding upstream 86702 3293459 ~ 3322968 (+)
G70821 NA non-coding upstream 103649 3305533 ~ 3306021 (+)
G70819 NA non-coding upstream 133148 3274595 ~ 3276522 (+)
G70779 NA non-coding upstream 352706 3046392 ~ 3056964 (+)
G70742 rmnd5b,LOC106612137,LOC105026275,LOC107653309 non-coding upstream 447560 2958702 ~ 2962110 (+)
G70883 NA non-coding downstream 23326 3598084 ~ 3599084 (+)
G70892 NA non-coding downstream 105244 3680002 ~ 3682460 (+)
G70986 NA non-coding downstream 158864 3733622 ~ 3768722 (+)
G70993 NA non-coding downstream 171859 3746617 ~ 3747062 (+)
G70995 NA non-coding downstream 174082 3748840 ~ 3749607 (+)
G70846 NA other upstream 31060 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 117195 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1050441 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1216111 2088920 ~ 2193559 (+)
G70522 NA other upstream 2140266 1268767 ~ 1269404 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 782307 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1341055 4915813 ~ 4921820 (+)
G71247 NA other downstream 1381540 4956298 ~ 4980011 (+)
G71249 NA other downstream 1388944 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1925150 5499908 ~ 5505638 (+)

Expression


Co-expression Network