LOC103023864


Basic Information

Item Value
gene id LOC103023864
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3575561 ~ 3703751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95721
AGCAGACTGTGTAGAGTGAGGCTGCTGGAGCCGgagctctttctctgtgtgattTCTGTGCGTTTCTGCTGGGGTTTGAATCTGTTCATCTTTGTGCTTTCTGTGCTCATCTGCATCTCCTCGCAAGAGGAGAGAACCTACCAGCGCACGCTGCCATCGGGGGCGAAGGTGGTGTGTGATTTCTGTCCGCCGGGTGATTATCAGCGCTCTCCTTGCACGCTAACGCGCCCCACAGAGTGCCGCCAGTGCAGAGACGGCTTTTACACCGAGTTCTGGAACTACGTCCCCGAGTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCGGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCCGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGGCCTGCAAGGGTCAGGAGAAACCGGTGATCAGTGGGACCAATTGGCACGACAATATATGTGTTACCTGTGACAACTTCACAACACAAGgCTGGCCAACGCTCATCAAGCCTCTCCTCTCAGAGCTGTTCGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAGTCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGTGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCATCATGTAAAAGGACACGTTTGATATTGGTGTGAATATATTGGCCCCTGGGAACCGATTTagattgtttctttttttgtaatactGAACTAAGTACTGAAATTGGCAATTGGTAATTGGTTGTAGTTTAAATGGAAAAATAGAGTAGAAATCCCCAAGTCATCAAGTGCACTCCTTAGACTTCTCTGAGAATGGTGTGGGTGTGAAGGTCTTaacaattttaataaacatgcaTGATTGACAGCCCTCTATCACTGTTGAGCTTTTTACTCTGAATTATGATGTGATTCACAGATCCTGAAGGTTTTTGAGGTTGTGAAGTCTGTAGCTGGAGCTATCAACTCAAATATAGGCACAAGTGTATCGGCTTTAGCTCATAAGGCATTGACTAGCTTAACTCTCACCTTGGCTAGTTGCTCAGACTTGAAGAGGGGGGGCGGAGCCATGCAGCATTGTGATTGGCCAGGAATATACTGACAAAGACTTGACCCACTTTTAGCCCTGCCCATTCTATATTGAGAGAATAGTAATACTGGTGAACTACAGCAAATATTTATTAGACTTTAGGACCATTTTCATTAGAAATACTTTGCTTTATTCACATTTTGGGCCCAAAGGAGTCTGAATAAGTGaaataaatctgaaataaaacttAGATGTACATTCCCAGGGGCTTTAAATTCTTGCAAATTTTGTAAAACTTTTACAAGAGCAGTATGTGTTATATTTGTGCTTATTGCtaatttattttagtcatttttttgtttttgttcgttttaatttatgatttttatatgtgtgtgtatataaatgtttttttttttgctcagtgaGCAATTTTAGTCACTTGATCTAATTTGATCCTGCa
>TU95723
tcttattattattattattattattattattattattattattattactattatttatacatGTCTGTATATAGaagttcatattttttaaacagactATTCATTGGAACAGTTTATTATAAGTGCATGGTATGTGTATGATGAATTATAAAAGCTCTCTGGACACAGTTTAAGCCCTTTACTGGTTAAAATGGCAATGGAGAGTGATGatgtaaaacagattttattttatgtatgtaaaaaaaatgctggcttattaaattatattgcaCTGTcaaaaaaaaaaaaaaaa
>XM_022671976.1
CAGAGTTTCCTATTTAAACAGGGCAGATAGAGAGAGCAGCATCAATCCACCGAGACCGAGGCAGCAGGAGCAACATGACGCGCGCCTGGAATCTGTTCATCTTTGTGCTTTCTGTGCTCATCTGCATCTCCTCGCAAGAGGAGAGAACCTACCAGCGCACGCTGCCATCGGGGGCGAAGGTGGTGTGTGATTTCTGTCCGCCGGGTGATTATCAGCGCTCTCCTTGCACGCTAACGCGCCCCACAGAGTGCCGCCAGTGCAGAGACGGCTTTTACACCGAGTTCTGGAACTACGTCCCCGAGTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCGGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCCGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGGCCTGCAAGGGTCAGGAGAAACCGGTGATCAGTGGGACCAATTGGCACGACAATATATGTGTTACCTGTGACAACTTCACAACACAAGgCTGGCCAACGCTCATCAAGCCTCTCCTCTCAGAGCTGTTCGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAGTCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGTGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCATCATGTAAAAGGACACGTTTGATATTGGTGTGAATATATTGGCCCCTGGGAACCGATTTagattgtttctttttttgtaatactGAACTAAGTACTGAAATTGGCAATTGGTAATTGGTTGTAGTTTAAATGGAAAAATAGAGTAGAAATCCCCAAGTCATCAAGTGCACTCCTTAGACTTCTCTGAGAATGGTGTGGGTGTGAAGGTCTTaacaattttaataaacatgcaTGATTGACAGCCCTCTATCACTGTTGAGCTTTTTACTCTGAATTATGATGTGATTCACAGATCCTGAAGGTTTTTGAGGTTGTGAAGTCTGTAGCTGGAGCTATCAACTCAAATATAGGCACAAGTGTATCGGCTTTAGCTCATAAGGCATTGACTAGCTTAACTCTCACCTTGGCTAGTTGCTCAGACTTGAAGAGGGGGGGCGGAGCCATGCAGCATTGTGATTGGCCAGGAATATACTGACAAAGACTTGACCCACTTTTAGCCCTGCCCATTCTATATTGAGAGAATAGTAATACTGGTGAACTACAGCAAATATTTATTAGACTTTAGGACCATTTTCATTAGAAATACTTTGCTTTATTCACATTTTGGGCCCAAAGGAGTCTGAATAAGTGaaataaatctgaaataaaacttAGATGTACATTCCCAGGGGCTTTAAATTCTTGCAAATTTTGTAAAACTTTTACAAGAGCAGTATGTGTTATATTTGTGCTTATTGCtaatttattttagtcatttttttgtttttgttcgttttaatttatgatttttatatgtgtgtgtatataaatgtttttttttttgctcagtgaGCAATTTTAGTCACTTGATCTAATTTGATCCTGCactgttaactttttttttgcttttttattatttaaaaactgcctCATGAAAATTACCTCTTAGTGTTCactgtgttttttataatttaattgacctgatcattttcagaacattttataagatataaaataaagaatatattatGAGCACTATGGGTCCATTTCCtcgacagggattaagcctatagaatatattttaaataatttaattttaatagaaaatctCAATTCAAAAGGATGTGCAGTCCAACactaggcctaatccctgtctgggaaactgtctCCATGTTATAGGGCTTATTGTATACAaaatatcttattattattattattattactattatttatacatGTCTGTATATAGaagttcatattttttaaacagactATTCATTGGAACAGTTTATTATAAGTGCATGGTATGTGTATGATGAATTATAAAAGCTCTCTGGACACAGTTTAAGCCCTTTACTGGTTAAAATGGCAATGGAGAGTGATGatgtaaaacagattttattttatgtatgtaaaaaaaatgctggcttattaaattatattgcaCTGTG

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0010941 regulation of cell death biological_process
GO:0010942 positive regulation of cell death biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043067 regulation of programmed cell death biological_process
GO:0043068 positive regulation of programmed cell death biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95721 False 1764 lncRNA 0.44 4 3634280 3641649
TU95723 False 292 lncRNA 0.23 3 3575561 3703751
XM_022671976.1 True 2339 mRNA 0.40 4 3633716 3641881

Neighbor

gene id symbol gene type direction distance location
LOC103024174 LOC108442487 coding downstream 66565 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 168130 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 229085 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 239775 3323898 ~ 3335786 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding downstream 258009 3298210 ~ 3317552 (-)
LOC103042532 LOC108442489 coding upstream 158367 3862118 ~ 3910529 (-)
LOC103026470 LOC108435611 coding upstream 743421 4447172 ~ 4462972 (-)
LOC103041488 NA coding upstream 1254354 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 1257838 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 1311121 5014872 ~ 5046137 (-)
G70951 NA non-coding downstream 53174 3459881 ~ 3522387 (-)
G70947 NA non-coding downstream 120337 3454877 ~ 3455224 (-)
G70946 NA non-coding downstream 123949 3450905 ~ 3451612 (-)
G70938 NA non-coding downstream 160522 3414588 ~ 3415039 (-)
G70927 NA non-coding downstream 265710 3309452 ~ 3309851 (-)
G71040 NA non-coding upstream 162033 3865784 ~ 3938383 (-)
G71067 NA non-coding upstream 396479 4100230 ~ 4112464 (-)
G71081 NA non-coding upstream 463635 4167386 ~ 4216646 (-)
G71153 NA non-coding upstream 602950 4306701 ~ 4310021 (-)
G71156 NA non-coding upstream 623320 4327071 ~ 4333955 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 116751 3444095 ~ 3458810 (-)
G70924 ndufb9 other downstream 221962 3280156 ~ 3353599 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 830489 2704195 ~ 2745072 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 2540545 1009886 ~ 1035016 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 32875 3736626 ~ 3848624 (-)
G71175 NA other upstream 708197 4411948 ~ 4413011 (-)
G71235 NA other upstream 1178419 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 1220249 4924000 ~ 4924071 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 1767915 5471666 ~ 5476375 (-)

Expression


Co-expression Network