G71005 (LOC108413582)


Basic Information

Item Value
gene id G71005
gene name LOC108413582
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3842694 ~ 3844794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95771
cagtctgccactgaacacactcctctgcttcatgatggtggtgtgaagtgggtgactatcattgttcatgatagaaagcagtttatccaaagtccttctctcagctattgtaaccagagagtccagctccacttcagccactgccccggccctcctgaccagcttgtccagccgtgatgcatctctcctcttcatgttgcctccccagcacaccacagcgtagaagagaatgctggccacgattgattggtagaacatctgcagaagcttcttacagatgttaaaggaccgcagtctcctcaagaaatagagccggctctgtcccttcctgtacagggtgtctgtatttgttgaccaatccagtttgttgtccagctgcagaccaaggtacttgtagAAGAGGTAGGGAGGTGTCCAGTGGGGCAGAGGCTGAGGTTGCTGAGATAGCAggacagacagaagcaggtgaggatGAAACAGGGCAATCAAACCGGTTATAGAAGAGATTGAGTTCGTTCGCTCTCTCCACACCACCAGCTGTTGCACTATCACTCTTTGGCTTGCACCCTGTGATTGTCCTCATACCGTCCCAAACTTCCTTCATGTTGTTAACTTGTAACTTCTGCTcaaccttcttcctgtaggtCTCCTTAGCCTCCTTTAAGCAGGACTTGAGTTCACGCTGAATATTCTTCAACTCCTCCTGGTTCTTGTCTTTAAAGgccctcttctttttgtttaagaGGTCCTTTACGTCGCTTGTAATCCAGGGCTTGTTGTTGGCAAAGCAGCGAACAGTTCTTACAGGAACCACAATGTCCATGCAAAAGTTCAGATAGTCAGTTGTGCAGTCTGCTACCCCCTCAATGTCCTCACCGTGAGAGTCCTGAAGCACACTCCAGTCTGTGGATGCAAAGCAGTCCTTCAGGGTCTCCTCTGCCTCCTGAGACCACTTCCTGAAGGAGCGTGTTGTGGTTGGTTGCCTCATCACACAGGGTTTGTAATGAGGCTTCAGGAAAACCAGGTTGTGATCAGATTTTCCAAGTGGGGGCAGTGGGATGGCGGTGTACGCATCACTGATGTTAGCATACAGGAGGTCAATTGTCCTGTTTTTTCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108413582

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95771 True 1117 lncRNA 0.49 2 3842694 3844794

Neighbor

gene id symbol gene type direction distance location
LOC103043978 NA coding upstream 403539 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 489099 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 729060 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 760755 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 895965 2871576 ~ 2946729 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 79178 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 110214 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 287228 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 461871 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 1013054 4857848 ~ 4884488 (+)
G70986 NA non-coding upstream 73972 3733622 ~ 3768722 (+)
G70997 NA non-coding upstream 75919 3766437 ~ 3766775 (+)
G70995 NA non-coding upstream 93087 3748840 ~ 3749607 (+)
G70993 NA non-coding upstream 95632 3746617 ~ 3747062 (+)
G70892 NA non-coding upstream 160234 3680002 ~ 3682460 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding downstream 39544 3884338 ~ 3888895 (+)
LOC111193074 NA non-coding downstream 111650 3956444 ~ 3960203 (+)
G71048 NA non-coding downstream 150113 3994907 ~ 3995590 (+)
G71052 NA non-coding downstream 245294 4090088 ~ 4090634 (+)
G71073 NA non-coding downstream 307064 4151858 ~ 4154229 (+)
LOC111193071 NA other upstream 267936 3409670 ~ 3574758 (+)
G70846 NA other upstream 464084 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 550219 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1483465 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1649135 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 512271 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1071019 4915813 ~ 4921820 (+)
G71247 NA other downstream 1111504 4956298 ~ 4980011 (+)
G71249 NA other downstream 1118908 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1655114 5499908 ~ 5505638 (+)

Expression


Co-expression Network