LOC103042226 (LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488)


Basic Information

Item Value
gene id LOC103042226
gene name LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3736626 ~ 3848624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95798
gACCAGATTTCCTCACTCTGTATCTGGAAGAACCGGATAAATCTGGACACAACTATGGACCTGTCAGTGGAGGGTTGGTCAGTGCCATCCAGGGAGTGGACAAAGTGATGGGACACCTGATGAACGGACTGAAACAGCTCAACCTTCACGAGTGCATCAACATCATTGTTGTAGCTGATCACGGCATGGCTGAAACTAGCTGTGACCGGACGGAGGCGCTGCAGGACCTGGTGGGAGACGTCTCACACCTGTACGTTACTCAAGGTCCATTTGGACGAATCAGAGCAGCAGACAAAACAGTGACCTTGGACGCCGCAGGGCTGGTGGCCAACATGACAtgcaaGAAGCTTGATCAGAAGATAAAGGCCTACTTGAAGTCTCACATGCCAAAACGCTTCCACTATGCAAACAACCGGCGTATAGAGGACGTGAATGTGCTTGTTACCTCACGCTGGCTGTTTGAAAGTTTCCCAGGTGCCCTCACATTCTGCTCTGGTGGAAATCATGGCTATGACAACGATGACTACAGCATGCAGGCTATGTTCTTAGGTTATGGACCCAAATTTCAGTTTCAGACCGAAGTGGAGCCGTTCTCCAACATTGAGCTGTACAATCTCATGTGTGACATAATGGAAATCACTCCAGCCCACAATAACGGAAGTCATGGCAGCCTGAACCACATGCTGCGGACTCCGCCCTTCTCACCACAGCACCCGCAAGAACAAAGCCTCCCCGGCCAGTGTCCTCTGGCCACCCTGGTGCCGACTGATCCACTGGGCTGCTCATGCCCTGCACTGGTACCCAATAACACACACTTAAC
>TU95818
AGGGGATGTACTCTGAGTCTCATGGATTGGTGGATAACAACATGTACGATCCTGTATTTGATGCTACATTCGGTCTGTCCAATCCTGAGAAAGACAATCCCAGATGGTACCAAGGACAACCGatctGGCACACAGCGATGTATCAGGGTCTGAGAGCAGGAACGTTCTTCTGGCCAGGATCAGACGTGGCCATAAATGAAACTTTCCCAAACTTATATGAGAAATATGATGG
>TU95819
TGAACACTGAACTTCCCACAACACGTGAGGACGGGATGTACTCTGAGTCTCATGGATTGGTGGATAACAACATGTACGATCCTGTATTTGATGCTACATTCGGTCTGTCCAATCCTGAGAAAGACAATCCCAGATGGTACCAAGGACAACCGatctGGCACACAGCGATGTATCAGGGTCTGAGAGCAGGAACGTTCTTCTGGCCAGGATCAGACGTGGCCATAAATGAAACTTTCCCAAACTTATATGAGAAATATGATGG
>XM_022671903.1
GGTATgtgactgcagtgtgtgtaggtgagtgtgtgtatgtaagtgcAGGTAGACTTCAGTCGCTGAGACGTGTTCATGCGTTACACACAGACTCCACTCAGGTGTGTAAATCATTAAGATGATGTTCGAAAAGCCTGAGCTGAGCAAAAAGAAGCTCATCATTGTAGTTGTTTTGGCTGTTTCTATTGTGACTATCATACTTGGACTGGGTCTGGGACTCGGACTTCAGCTGGAAAGCTGCAGGAACAAAGCCCCGGTGTCGTGTCGGGACCGCTGCTATGAGCCGTATGATTTCGAGTCTCCAGGATGCCGCTGTGATGAGCAGTGCGTTGCCAATAACAACTGTTGCTATGACTTCAAGGACATCTGTCTCCAGCCAACTGAGACCTGGGAGTGCACTACACTGCGCTGTGGGGAGAAGCGTATCTCCAGCAGTAACTGCCACTGCTCTGCTGACTGTCTGAGTGCTGGAGACTGCTGCACTAATTATAACATCGTCTGTAACGGAGCAAAGTCCTGGGTGGAGGATGTGTGTGAGAACACGGAGAGCACCAAGTGCCCCAACAAgtggaagGGGATGTACTCTGAGTCTCATGGATTGGTGGATAACAACATGTACGATCCTGTATTTGATGCTACATTCGGTCTGTCCAATCCTGAGAAAGACAATCCCAGATGGTACCAAGGACAACCGatctGGCACACAGCGATGTATCAGGGTCTGAGAGCAGGAACGTTCTTCTGGCCAGGATCAGACGTGGCCATAAATGAAACTTTCCCAAACTTATATGAGAAATATGATGGACCAGATTTCCTCACTCTGTATCTGGAAGAACCGGATAAATCTGGACACAACTATGGACCTGTCAGTGGAGGGTTGGTCAGTGCCATCCAGGGAGTGGACAAAGTGATGGGACACCTGATGAACGGACTGAAACAGCTCAACCTTCACGAGTGCATCAACATCATTGTTGTAGCTGATCACGGCATGGCTGAAACTAGCTGTGACCGGACGGAGGCGCTGCAGGACCTGGTGGGAGACGTCTCACACCTGTACGTTACTCAAGGTCCATTTGGACGAATCAGAGCAGCAGACAAAACAGTGACCTTGGACGCCGCAGGGCTGGTGGCCAACATGACAtgcaaGAAGCTTGATCAGAAGATAAAGGCCTACTTGAAGTCTCACATGCCAAAACGCTTCCACTATGCAAACAACCGGCGTATAGAGGACGTGAATGTGCTTGTTACCTCACGCTGGCTGTTTGAAAGTTTCCCAGGTGCCCTCACATTCTGCTCTGGTGGAAATCATGGCTATGACAACGATGACTACAGCATGCAGGCTATGTTCTTAGGTTATGGACCCAAATTTCAGTTTCAGACCGAAGTGGAGCCGTTCTCCAACATTGAGCTGTACAATCTCATGTGTGACATAATGGAAATCACTCCAGCCCACAATAACGGAAGTCATGGCAGCCTGAACCACATGCTGCGGACTCCGCCCTTCTCACCACAGCACCCGCAAGAACAAAGCCTCCCCGGCCAGTGTCCTCTGGCCACCCTGGTGCCGACTGATCCACTGGGCTGCTCATGCCCTGCACTGGTACCCAATAACACACACTTAACCATAACTTTCATAAGAAACATTATTCCTCTTGTACTGTACAGGTTTGTCGTCTCCAGCTGGACTCCAGGTGACACTCCCAGCATGTGCTCAGCCAAACTCGCCCAGACtgttctggagagtcctgaaaCGTCAAAACATGGAAAAACTTCACACCCTTTAGGAAAATGTGTTTGTAAAATGGTACATGGATGCatattttgtatgtgtgtgtgtgtgtttgcagaggCTGCTAGTGAGAAGAAACACCTGATGTTTGGGAGACCCCGAGTCCTGCAGTCCCTCTCTGAATACTGTCTTCTGCACCAAGAAGGGTTTATCAGTGCCTACAGCCGAAACACACACATGCCTCTGTGGAGCTCATTTACCGTGGAAAAACcgGCTGGAGGAAGTTCTGACCCTCTGCCAGGAGTGACGGAAGACTGTCTGAGGCCAGATGTTCGAATCCCAGAGGATCAGAGTCCCACCTGTGATCAATACACCAACGCCGGCAACGTCACACATGCCTTCCTGTACCCGCCCAGTCTGAACAGTACAGCAGAAGAACAGTATGATGGGCTGATTCTCAGTAATGTGATTCCGATGTATCCAGAGTTTAAGAAGATATGGCAGTATTTTCAGGACGTCCTGCTGGTAAAGTATTCCTCTCAGTATAATGGGATTAACGTGGTGACCGGCCCTGCCTTCGACTACAACTACGACGGCCACTTCGACACAGCCGAGCAAATTCAAGAgtttgtTACAGGAACTGGCATTCCCATTCCCACTCATTACTTTGCAGTTGTGGCAAGCTGCTTGGACGCGAATCGGCCGGTGACGGACTGCGCGGGAGAATTTTACACCATCTCCTTCTTATTACCTCACAGACCCGACAACTCAGAGAGCTGCATGagtaatcaAGCAGAGTCCACCTGGGTTGAGGACCTGATCTGGTTCCATCAGTCACGCGTAATGGACGTAGAGTGGATCACAGGACTGAGCTTCTTCCAGGACAGCGGTCGCCCGGTTCCTGAGGTCCTGCGGGTGAAGACCCGGCCCACTGCAGCCATTCAGAGAAGAACATGAAGGATGTAATTTACATAATCATGAAAATACACATGAAAttcatgttttaatataaaaccaGGCAAATTTATGGATATataaaattatgtatttaatgCTGCTTACAATCTAAGCAAAATTTGGTTCTTTAAAGTTCTTAGAAAGGGTTATTTGACTTTTAACAAGAGTGGAAACGTTTTGGTTCca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95798 False 820 TUCP 0.52 8 3769161 3807099
TU95818 False 232 lncRNA 0.46 2 3810265 3811074
TU95819 False 262 lncRNA 0.46 3 3810265 3811966
XM_022671903.1 True 2872 mRNA 0.49 23 3736626 3848624

Neighbor

gene id symbol gene type direction distance location
LOC103024174 LOC108442487 coding downstream 227630 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 329195 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 390150 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 400840 3323898 ~ 3335786 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding downstream 419074 3298210 ~ 3317552 (-)
LOC103042532 LOC108442489 coding upstream 13494 3862118 ~ 3910529 (-)
LOC103026470 LOC108435611 coding upstream 598548 4447172 ~ 4462972 (-)
LOC103041488 NA coding upstream 1109481 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 1112965 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 1166248 5014872 ~ 5046137 (-)
G70979 NA non-coding downstream 25489 3690315 ~ 3711137 (-)
G70965 NA non-coding downstream 137542 3598084 ~ 3599084 (-)
G70955 NA non-coding downstream 151985 3515038 ~ 3584641 (-)
G70951 NA non-coding downstream 214239 3459881 ~ 3522387 (-)
G70947 NA non-coding downstream 281402 3454877 ~ 3455224 (-)
G71040 NA non-coding upstream 17160 3865784 ~ 3938383 (-)
G71067 NA non-coding upstream 251606 4100230 ~ 4112464 (-)
G71081 NA non-coding upstream 318762 4167386 ~ 4216646 (-)
G71153 NA non-coding upstream 458077 4306701 ~ 4310021 (-)
G71156 NA non-coding upstream 478447 4327071 ~ 4333955 (-)
LOC103023864 NA other downstream 32875 3575561 ~ 3703751 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 277816 3444095 ~ 3458810 (-)
G70924 ndufb9 other downstream 383027 3280156 ~ 3353599 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 991554 2704195 ~ 2745072 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 2701610 1009886 ~ 1035016 (-)
G71175 NA other upstream 563324 4411948 ~ 4413011 (-)
G71235 NA other upstream 1033546 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 1075376 4924000 ~ 4924071 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 1623042 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 1980997 5829621 ~ 5841707 (-)

Expression


Co-expression Network