G71067


Basic Information

Item Value
gene id G71067
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4100230 ~ 4112464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95864
gTAAAAACAAGTTTGATTCAAAATAAGATGAATCTTTGAGAGTGTGATGAAAACACTCTccttaaacactttttaaaatgggTTTAAAATGGAACAAAGCAAATCTTTAAGCAAGGTCATCACACTGACACCGTTACACGATACCCACGACTCATGGGCAAACACAATAAATGTTCACAAAGTCAatctaaacatatatattaatacatttagcaCCGTCCTATTCCATAAACTTATGAGCATATGTGAACTGGAATGTACAACAGCAGGTAATTCATGAGTCTGATAGGTGAGAAACATCTGTTTTATAAGACGCTTTATAAGACGTTAACGTTGTACCGTATGAACTGAGAAGCATCACACTGCAGAGACACTACCAacgaaacaaaataaataatctgaataaaataaatctgaaggatgaaaattaaaggaaaaaggaaaaaaaaggaaaaaaaaaaaaaaacttcagccaaaatttcttttaaaaaatgaacaaacgTCTGTTCTTTGTCATCATAGTCGAGAGAAACTCTTATCAACATATTTATCTACAAAATCCACTAGAATTATCTTAACATACGTACATGTGATTAATATTATAAACAGGCACTTAATACAGAGGCATCCAGACTCAGGACTTTACACAGGGATCAGAAGAGGGTGAAATGAATCAGTCTGCAGGACCAGATGATATAAAAGCGCAGATTTCATGGGGTTAAATCACAAGTTAGAGCTGATATTATTGAACACATCAAAAAGTGGTCTGTACATGATGGTTGATATGAAAGTTATTTTACAAtgactggaaaaaagagagagagagacagagagagagagagagagagatcgttgctgtccaatgaaaaacaagtatctctatttttatcatttatcactTGTTTACTACATAGTTTGAAAACACAAACTGTTCCTCACACTGTGacacatttcttgatgaatgaaccaatagaaattctcaaaaatgacctgaaataaacgttttttacattgacttaccTCTCtactgtaaagctgctgttttgaagattCTTGTTTtctattggacagcaacaatatagagagagacaaaagatgaatagagagagagacagagaaagagagttcACTGTATTTCAGGCACTTGGATACTTTCACACATTACATCTCACTGCACTGCTCGACCCCAATCACTTCTCTTAATCCCACTCATTCAGCAACACCCGGGGTTCTTCTTTAAAAGGGTCTCAGAGCCCAAAATCTACACATATTACCACAATGTAATGTCATGTATTATAACACCACTGCTCCAAAAAAATTCCACTGTTCAAATTCACACAATTtcaacacttttagtttaatcaaTCAGCCAGGACGTGTTTGGTGTCTAAAGTTTCCTtagaaaagaagcaaaaatgacttttaaataacttttggGAAATGAGagtgcatattttttttcttgaaaggTTCACTAATGATCACATTTACTACTGGCATTTACAGAAGAATATTTTTATCTTGAAACtgataaaattttataaaacttttataaaatacaaCTTAAATTACTATAGAGCATTTACTTCAACTCAGAACACGGTTAAAGCTTTTCTTATCAAGACTTGGATTGtaaatgtgttattaaatatatgtagATTGTAATGGAACACAATATTTGCAAAAGTATTGGtaattttcaaaataaaagtttattttaaaataattttagcttTTTCTGCGGTATCATTTTTTGGGGGTGgcaaatccacctatttctgatatttctGACAATGCTTACAGTGAATGTTACTCATTCAAAATACTCTACCAAAGTTTTTTGAAAGCATAACAGTGTCATAACCCACATAAGCAATGCTAATGTCCTGAGCTCTAGATTTATATATTAGCCTCGTAGCTTCAGCTCAAAGCCAATTCCGACACCAAACATTTCTTGGCTGAGATAAAAGCGGAGATAATTGCTTTAGTTaacttttattagaaacatgctCTCGAGAGGGGGGCTTTTTCATGGCGGGGATTCAGATTTCAGCAcaattttcaaaataaaagttctttaaaaccatttctgctttttctgcggtttaattttttttggggggggggggggggacaaatccacctatgTCTGTCAGACTTTTCTAAAAGCATATCAGTGTCATAACCCACATTAGCAATGCTAATTTCCTGAGCTCTAGATTCctattagcctcatagcttcaGCTCAAagccacttctgacaccaaacaTTTCTCGGCTGATTGACTGCATTTATTAAAGGGAAATCTGTGTTATTGACTGCTTGGCCACAGAGTATTCCTTTAAGGGTTTAAAAAATGGTTAACcagagttaatttttttatttaatagaggTTAATAGATCTTTTCCGGATTTCTTTTCTGACCCCGCCTCCACGTCGATACGCTGCGAGTCTGCCGCTGTATTCCTGGCGACCGcagctcctccagctcctccgcCATGACTGGGTCGTCCGGTTCCACGGGGCGGGGCTGGGGGTAGTTGGGCTGGTAGTAGGAGGGGTACGTGCCATAGCTTCCGTAGGGGTCCTCCTCCCCTCCCTCCTCCTCGGCGCCGTACGTTTGGTACGAGTTTGGTGGCAGTTGGACTATGGGAATATCGCGGTCAGTCACTTCACGGTCAAACTCCCTCTCTGACCACCACCAAGCGGCACGGCACAGAGGCAAATGGACAACgagcccacacacacataacacacacgcacacacacataacacacacacacagacacacccatAGAGTGGACGGAGAGGACACACAAGCACAAGGTTACTGGTGACATCAGTGCacccgcagcagcagcaagcaGCACGTGGAGTTAGaacgagtgagtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgcgtgcatttgcgtgtgtgtgtgagtgagtgtgtgagtgtgtattagCTAGATAAGCTCATACATAAACACCAACACATATGATCCCCGTCAGTCAGTACTGAATTAGCAACATGTGGCTGGTTAACAACAATGCAGCcctgtgtgagtttgtgtgtgtgtgtgtgtgtgtgtgtggtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaagaaaAAGCCTCCAGGCATCTGCACCATCAACAACCTACacacagagagtgtgtgtgaatggagcCTACTGCTCAGTACTCATTCACAAACTGTATCTGGTCGTcaacCCCAACGTTGTATCCGCAGGAGTTTGGATCACAGTAGCCCGGGGGTCCTGCGGGTCCTACTGGTCCAGGCATGCCCGGCCTGCCCGGGGTCCCAGAGTTACCAGGACGGCCAGCAGGGCCCGGACCACCAGTCCTCCCCTCACCAGGTGGC
>TU95867
gTAAAAACAAGTTTGATTCAAAATAAGATGAATCTTTGAGAGTGTGATGAAAACACTCTccttaaacactttttaaaatgggTTTAAAATGGAACAAAGCAAATCTTTAAGCAAGGTCATCACACTGACACCGTTACACGATACCCACGACTCATGGGCAAACACAATAAATGTTCACAAAGTCAatctaaacatatatattaatacatttagcaCCGTCCTATTCCATAAACTTATGAGCATATGTGAACTGGAATGTACAACAGCAGGTAATTCATGAGTCTGATAGGTGAGAAACATCTGTTTTATAAGACGCTTTATAAGACGTTAACGTTGTACCGTATGAACTGAGAAGCATCACACTGCAGAGACACTACCAacgaaacaaaataaataatctgaataaaataaatctgaaggatgaaaattaaaggaaaaaggaaaaaaaaggaaaaaaaaaaaaaaacttcagccaaaatttcttttaaaaaatgaacaaacgTCTGTTCTTTGTCATCATAGTCGAGAGAAACTCTTATCAACATATTTATCTACAAAATCCACTAGAATTATCTTAACATACGTACATGTGATTAATATTATAAACAGGCACTTAATACAGAGGCATCCAGACTCAGGACTTTACACAGGGATCAGAAGAGGGTGAAATGAATCAGTCTGCAGGACCAGATGATATAAAAGCGCAGATTTCATGGGGTTAAATCACAAGTTAGAGCTGATATTATTGAACACATCAAAAAGTGGTCTGTACATGATGGTTGATATGAAAGTTATTTTACAAtgactggaaaaaaagagagagagagagagagagagagaaagagagatcgttgctgtccaatgaaaaacaagtatctctatttttatcaatatttgaacacacaaactgtcctttaaaCTTTGTCAAAATTTTATGTTGAATGGATCaacagaaattctccaaaatgacctaaaataaactgtttttacattgatttctatTGAAatgttgaatgtttttttttctctctcctgctaagttgctgttttaaagatacttgttttccattgaacagcaacaatatagaaagaggcagacagagagagagacagagagagagagacagagagagagagagagatacagtacGTTGCTgcccaatgaaaaaaaatctcaatttttgttatttgtttgtctcaaaaatgacctaaaataaaaaaaaaatctcaaaaatgacctaaaataaattgttttacgCTGATTTCTTTTGAAAGGAATGAAGGTTTTACCTCTcctataaagttgctgttttaaagatacttgttttccattggacagcaacaatatatatagagacagatagagagagagagagagagagagagagagagagagatcgttgctgtccaatgaaaaacaagtatctctatttttatcatttatcactTGTTTACTACATAGTTTGAAAACACAAACTGTTCCTCACACTGTGacacatttcttgatgaatgaaccaatagaaattctcaaaaatgacctgaaataaacgttttttacattgacttaccTCTCtactgtaaagctgctgttttgaagattCTTGTTTtctattggacagcaacaatatagagagagacaaaagatgaatagagagagagacagagaaagagagttcACTGTATTTCAGGCACTTGGATACTTTCACACATTACATCTCACTGCACTGCTCGACCCCAATCACTTCTCTTAATCCCACTCATTCAGCAACACCCGGGGTTCTTCTTTAAAAGGGTCTCAGAGCCCAAAATCTACACATATTACCACAATGTAATGTCATGTATTATAACACCACTGCTCCAAAAAAATTCCACTGTTCAAATTCACACAATTtcaacacttttagtttaatcaaTCAGCCAGGACGTGTTTGGTGTCTAAAGTTTCCTtagaaaagaagcaaaaatgacttttaaataacttttggGAAATGAGagtgcatattttttttc
>TU95868
agagagataaagagagagagagagagagagagagagagagagagagagagagagaaatatacaatatattgctgtccaatgaaaaaaatctcTATTTTGTCCCTCACACTGTCACAATTTCAAAAATGTCtcaaaaatgacctaaaataaattgttttacgCTGATTTCTTTTGAAAGGAATGAAGGTTTTACCTCTcctataaagttgctgttttaaagatacttgttttccattggacagcaacaatatatatagagacagatagagagagagagagagagagagagagagagagagatcgttgctgtccaatgaaaaacaagtatctctatttttatcatttatcactTGTTTACTACATAGTTTGAAAACACAAACTGTTCCTCACACTGTGacacatttcttgatgaatgaaccaatagaaattctcaaaaatgacctgaaataaacgttttttacattgacttaccTCTCtactgtaaagctgctgttttgaagattCTTGTTTtctattggacagcaacaatatagagagagacaaaagatgaatagagagagagacagagaaagagagttcACTGTATTTCAGGCACTTGGATACTTTCACACATTACATCTCACTGCACTGCTCGACCCCAATCACTTCTCTTAATCCCACTCATTCAGCAACACCCGGGGTTCTTCTTTAAAAGGGTCTCAGAGCCCAAAATCTACACATATTACCACAATGTAATGTCATGTATTATAACACCACTGCTCCAAAAAAATTCCACTGTTCAAATTCACACAATTtcaacacttttagtttaatcaaTCAGCCAGGACGTGTTTGGTGTCTAAAGTTTCCTtagaaaagaagcaaaaatgacttttaaataacttttggGAAATGAGagtgcatattttttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95864 True 3405 lncRNA 0.40 4 4100230 4108878
TU95867 False 2010 lncRNA 0.33 2 4106621 4108878
TU95868 False 913 lncRNA 0.35 2 4106621 4112464

Neighbor

gene id symbol gene type direction distance location
LOC103042532 LOC108442489 coding downstream 189701 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 591234 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 692799 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 753754 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 764444 3323898 ~ 3335786 (-)
LOC103026470 LOC108435611 coding upstream 334708 4447172 ~ 4462972 (-)
LOC103041488 NA coding upstream 845641 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 849125 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 902408 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 1018138 5130602 ~ 5137613 (-)
G71040 NA non-coding downstream 161847 3865784 ~ 3938383 (-)
G70979 NA non-coding downstream 389093 3690315 ~ 3711137 (-)
G70965 NA non-coding downstream 501146 3598084 ~ 3599084 (-)
G70955 NA non-coding downstream 515589 3515038 ~ 3584641 (-)
G70951 NA non-coding downstream 577843 3459881 ~ 3522387 (-)
G71081 NA non-coding upstream 54922 4167386 ~ 4216646 (-)
G71153 NA non-coding upstream 194237 4306701 ~ 4310021 (-)
G71156 NA non-coding upstream 214607 4327071 ~ 4333955 (-)
G71164 NA non-coding upstream 227082 4339546 ~ 4340305 (-)
G71178 NA non-coding upstream 304098 4416562 ~ 4490878 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 251606 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 396479 3575561 ~ 3703751 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 641420 3444095 ~ 3458810 (-)
G70924 ndufb9 other downstream 746631 3280156 ~ 3353599 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 1355158 2704195 ~ 2745072 (-)
G71175 NA other upstream 299484 4411948 ~ 4413011 (-)
G71235 NA other upstream 769706 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 811536 4924000 ~ 4924071 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 1359202 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 1717157 5829621 ~ 5841707 (-)

Expression


Co-expression Network