G71073


Basic Information

Item Value
gene id G71073
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4151858 ~ 4154229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95875
ttattattattattattattattattatttacgaTCAAAtacacagtttgtgtgtttttttctatagGAATAAACGGGCTGCACAGGTTTGCGTACCCTTCCAGTGTCACGATAGTGGAACTTTAATGGTCTATAGTGTCCACCTGATACACCATATTAACCATCTCTGATACCATACCATCCACCCAtctagcaatcacttagcaacaccaaagcaaccatgtATCAGTCACTTAGCAATGAATAAGCAAATTGGTGCCTTGTAACacccactaagcaacaccatattaCCACCTGGCAACACTCTCGCAACACCTAGTAACCACTTTATATAGCAACATAATATTGTCactatccaataaaaaaaaaacaatatctccaaaacatcaactttacaggagagagataaaaccttcttaactttcaatggaagtaaatgtaaaacTGTTTTCATTActttaggtaattttggagaaattctattagtccattcatcaaaaaaaatttACAGCGTAAGGGACAGTTGGTTTgttgaaattatgtagtaatttaaaaatcgacaaaaaaatatatacttgtttttcatttgacaGTGACCATATAAACCACTTGggatgccttagcaaccacctagcaacatagTAGCGGCCACTTAGTAGTAACTCTACTCCGACCACCTTGCAACACCCATATAGCACCCAgcttgcaaccacttagcaacaccatataatAACCATCAgaagcaaccacctggtaaccatttaataatgtaaatacaaccaattgggataccatagcagccacataGCAACCTGTGAACATGTTGTGCTGTCGTAACGCACGccaaaagtgtaattacggtgcatggcagtggacaaatagctattttattaaatacgaGGAAACGAAACTCAAAGATTTgaatccggacgggactaaaattaccggaggaccacagagttcagcgaaaaacagtagataattcagccggtaattttctcagaggatgtctgaggaagaaaaacatgtacatggtcgttccagacgggaataaaattaccacaGGACCCCCTAAAAAAcgaatcctgtccagatagggcttatgcTCTACTCTTATTTGACCTGCCAGTAGTGATCTTTCAGAGAGGACACTCCCTCATTGGTTTGGGACGAGAGTATCAGCCCTTGTCCTAAATTGAACTTGTCCTGAAGTGAACTTGTCCTCCAGTGCCCTTTTCCCCTCTCTGGAGCTGGAAGTACACTTTAATAAATAAGTGTGCTGCAAATGGTTATTTGAGTGATGCTgtagaaaaaaatgcattattggttctataaagaaccatgtttgtaaCAGAAAGAACCTTGTAGGTTCTTTACCAGTTTACTGGTTCTTCACACTcaattacaatacattttatactCACTGTACAATACATGAATATGACCTCATCATCATTTTACCTGACCTCAGTATTACTCGTTAGGTTCCATTAagtaattaagaaaaataaactagcatgttttagatattttatcatgtttcataCATTTCCAATTTATCTGGTCAATTGTCCCACCcgttcagctgctactcagctgtatatcccctatcactagtgatgccacgacaccaggagggtgaagactagcacacgcctcctctgatacatgtgaagtcagactccgcctcttttttagcttttttattgctgagtagcatcacagcgtgctcggaggaaagtgcagcgactcggttctgatacatcagctcacagatgccttgtgctaatCCACATcgccctaggagtgatgaggggaaagagcgctatctactgtacccaaccagagagagcaaggtcagttgtgctctctcagggctctgacagctgatgccaagatgtatgaaattCACAAACACAGTTTCGGTTGCAAAATTGATGACTAACCGTGTTTGTGAATTTCAGAAGGACTTTTAAGAAGTTTTAGGTGGAAGTGGTCCCCCTGTGGTATTGAGCTGTCAGCCTCTCATTGGCTGATTATGTGACCTTCAGTACTTGGGAGAGCtctcattggttgttttgtaattatttaCGTTTTGAAAACTAATCATTCAGGAATGATTAGATACAGATTATTAGATaccgctctggaaaaaatattagaccacttcagtttctgaatcagtttatctgattttgctatttataggtgtatgtttgagtaaaataaacgttgttattccaaataaaaatatgcatttaaagcatttatttgcagaaaatgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95875 True 2285 lncRNA 0.39 3 4151858 4154229

Neighbor

gene id symbol gene type direction distance location
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 45895 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 216754 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 712703 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 798263 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 1038224 3095884 ~ 3113634 (+)
dpy19l4 dpy19l4 coding downstream 152436 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 703619 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 774948 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 788977 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 802050 4956279 ~ 4957026 (+)
G71052 NA non-coding upstream 61224 4090088 ~ 4090634 (+)
G71048 NA non-coding upstream 156268 3994907 ~ 3995590 (+)
LOC111193074 NA non-coding upstream 191655 3956444 ~ 3960203 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding upstream 262963 3884338 ~ 3888895 (+)
G71005 LOC108413582 non-coding upstream 307064 3842694 ~ 3844794 (+)
G71075 NA non-coding downstream 35396 4189625 ~ 4192656 (+)
G71103 NA non-coding downstream 136230 4290459 ~ 4290835 (+)
G71109 NA non-coding downstream 139008 4293237 ~ 4293456 (+)
G71112 NA non-coding downstream 148322 4302551 ~ 4302810 (+)
G71118 NA non-coding downstream 185236 4339465 ~ 4340328 (+)
LOC111193071 NA other upstream 577100 3409670 ~ 3574758 (+)
G70846 NA other upstream 773248 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 859383 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1792629 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1958299 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 202836 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 761584 4915813 ~ 4921820 (+)
G71247 NA other downstream 802069 4956298 ~ 4980011 (+)
G71249 NA other downstream 809473 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1345679 5499908 ~ 5505638 (+)

Expression


Co-expression Network