CI01000009_03791699_03858262 (NCAM2)


Basic Information

Item Value
gene id CI01000009_03791699_03858262
gene name NCAM2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3790698 ~ 3859234 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03791699_03858262.mRNA
ATGTCTATTACATCCACTCTCCTTTTTGATCTGGCTCCTGGGACGATGTTACTCTCCATCCTCATAGCGGGCTCGGGCTCATTCATTGCAGCAGGCCAATCTCGTTTATCTGTGTTGGGCTCTTGCATCTCCACAATGCTGGTTGTCGGTGGCGCATTGGCTGGTCTCTGGATGTGGAGTAGGGCTGGTGTAGTCCTTTGCCAGGCCGATGGTAAACGGGGAGTTGGTATTTACCAGCACCCACTCCACAAATGCGGCAAAGTTATCCCTGGGACCATCCACTGGAATTCTTACCTTAGACCATGGTAAAAGACACAGAGCGAGCGGTCCAGGTAGTGTGTTAGGCATGCTAGATGTAAAAAGTCCCTTGTGTGGTCTTCCAGTGGATGGTCACCCTGTTCCAGGCAGAGTATCTGAACTGCAGGGAAGTCTATGGATGAAAAACAAAAGGGAACAAAAAAGGGAAAAAACATTACAAAAAAAAAATCACTGTTTGGTCCATTCTTCTGTCACCAGTGGCTGTAGTGAATGAGTCGCACGACAGGAATAGTCCAAGGAAATATTGTTTTAATAAACAATCCAACACAGGAGAACACAACCACTTAAATCATAGATGAGAATGAACAAAGGAGCAGACTGAAACTCAGGATATAACTAGACAGGAACTAATGAGGTAATTAACAAGACACCAGGTGAACGGGATAACTAATCAGACACAACGGGAACCTGGGGCAAAAGACAGGCACTGAACTAAAACATAATGAAACATATCATAATCCTGACAATAAATATCATTATTATTATTATCATTATTATTATTATGCAGATCCCAAAATCACCCACCCCACATATCACAGAAAGAAAATTAAATATTGCAATGTCCATTTTTTCCAATATTGTGCATCCCTATACTTTATCAAATGCTGCGCAATATTGTCAAGTTGTCCTCTACACTATATTCTGTACCGCACTATGACCATAACCATGTGTGTGTTTGTAGTGATTGGGGAGCCTGTGAATCTGGACTGGTATAACCCGCAGGGGGAGCGGATGGTCCCGTCTCAGCGGGTGGCCCTGCACAATGAAGGTATCCGTTCCAGACTCACGCTCTACAATGCCAAAATAGAAGATGCTGGCATCTACCGGTGCCAGGCCAGCGACGCACAGGGACATACAGAGGAGGCCACTGTGGTGCTAGAGATCTACCAGAAACTGACATTCAGAGACGTGAGGTCTCCTCAGGAGTTTCGACAGGGCGATGTGGCTGAAGTGGTCTGTGATGTCACCAGCTCCCCCGTGCCTGTGGTCTCCTGGTTTTACAACAACGTGGAGATCATTGAAGATACTGAGAAGTTTCAACTCTTACAAAACAACAATCTGCAAGTCCAGAGAGTAACTAAAGCAGATGAAGGAGTGTATCGCTGTGAGGCCAGAGTCGAGGCCAGGGGAGAGATCGACTTCCGGGACATCATCCTGGTCATTAACGTTCCGCCAGTCATCTCTGTGCCGCAGCAGTCCTTCAATGCCACTGCGGACTATGGAGAATCTGTGACCTTCACCTGCCGGGCCTACGGCTCACCTGAACCCGATGTTACGTGGCACAGGAAGGGAGTGCAGCTCCAGGAATCGGAGCGGTATGTAATGAGAGCTCGAGGTACAACGCTCACAGTTCGAAACATTCAGCAGGACGACGGGGGCTCCTACACCTGCAAGGCCTCTAACAAGGCGGGAGAAGTTGATCATGAGCTGTTTCTCAAGGTTTTTGTCCAGCCCCATATTACTAAGCTAAGGAACGTGACGGCTGTTGAAGGCAGCGCTGCTATGATCTCCTGCAAGGCTGAGGGTGAACCTTTGCCCGAAATCTCCTGGAGGAGAGCAAGTGATGGGCACAGCTTTTCAGATGGAGATAAGAGTCCAGACGGCCGTGTGGAGGTGCGGGGCCGTTATGGCGAATCCATGCTGACTATTGTTGGAGTCAGGCTATCTGACTGGGGACGTTTTGACTGTGAGGCTCTCAGCAGAATCGGTGGACATCAGAAAAGCATGTTCCTGGATATTGAGTATGCACCAAAGTTCCAGACCAACCACACTATATTTTTCTCGTGGGAAGGCAACCCGGTCAACATTAGCTGTGATGTTATGTCTAACCCTCCGGCCACAATGCTGTGGAGACGGGAAAAGTTGACCATTCCCAGTGAGGGTGCTGGAAACATGCGAGTGCACAGTGCCCCCGGCAAATCTCTCCTAGAGGTTACCCCGATGTCAGACAGAGATTTTGGCCGTTACAACTGCACAGCCAGAAACAACATTGGGATGCGCTTCCAGGAGTTCATCCTAGCTCAAGCAGATGTTCCCTCAAACCCTTACTCTGTTCGGCTGAGCTCGGTGGCACAGCGCGTGGCCACAGTTACCTTCACAAAGCCAGACTCCCATGGCGGTGTACCCATCAGTTACTACCTGGTCAAATACAAAGACATCAGCTCACAGGACTGGAAGGATGTGAAATCACAGGGGACACAGACAATCGTGTTGCTCACTAACCTTGAGCCCAACACGACCTATGAGGTGAGAGTAGCGGCGGTGAATGGAAAAGGTCAAGGGGAGTTCAGCCGCACAGAGAGCTTTCAAACTCTGCCCATACGAGAGCCAAGTCCCCCTTCGGTTCAGGGTCAACGAGGGGTGGGGAAGGCGTACCGACTGGGTCTGGTCAAGCAGGACGATGGAGGAATGCCCATCTTGGAATACATTGTCAAATACAAAACATCTCTGATCGCCTGTGCATGTGGAGGTGAGAACAGGGGAAATGGAGATGTCACAGACAAGGAAGAGCAGTGGATGACAAAACTGGTTCCAGGTGTGAATGATTTTGTGCTGCTGCAACCGCTCCAGTGGAATACGCAGTATGAGGTGGAAATCACCGCCCGCAACGTCAAAGGCCTGTCTGAACCCACCTTTGTGAAGTTCTCCATGCCTCAGAAACCTGATATCACAGATTCGCTGTTCAGCGGCCTAGGCCTGGGCGCAGTGGTTGGGCTGGGGTTAGCTGGCCTGCTGCTGCTGCTCGTGCTAGTGGACGTCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTGCTCATGTGCATCACCCGCAAGCTCTGCAGCAAAAAGACAGCCACAGGCGGCAAGAGCAAAGAGCTAGAGGAGGGCAAAGCTGCCTACCTGAAATTGCCACTGAAAGAGGAAAACGGCAAGGAGACTCTAAAACCCGACACGATCGAGATCAAAGTTCATGGTGACAACAGCCTACACATGACACAGGAGGACAGCTTTGCTGTTGCTTTGAGTCTGATTCTTTGTTACTTGAAGAGGTTGGGTCTACACCCCTTTTTGCTACTATATGTCTCACCCAAATGCGAAGAAATTACTGAATGCTCAGTAGCAAAGCGAGGATCAACCACACTTGACCCCAAACTGAGAACATGGTACATGGGTGGTCCCGGTATTGTGCTCTGACACAGGCCCAACTCAGCCTGAACAATGAATTTCTCATAGATTACAAGTGTTTTTGTGGATGAAAATATGTCTTTGTTTTCATCACTTTTGTTTCATCAGAATCAGAGAAGCATCATATGTGTCATACTTTGTTGAGCTATAATGAAAAAAAAAAAAGTGCATTTCCTTTAGAAGCGTGTGAAAGTTTGTACATGTGTGTGTCTGAGTATGGACGTGTTGTTGTGAGGGTGTGTGATAGCGAGCACGGAGTGTAGAATGATAAAGAGTGACAAAGAAAGTAGAGGTTGCCAAATCATAAATGAAAATAAGGATTAGGAAAGTATGAAAAATATATATTCAAGTGTGCTGCTGTAAATACTTGTTATTTCTTTGGAGCATTTCACAACAGAAAAAAATATGATTCATTCCAGGTTCTGTCTTAGCATCACACATAACTGATGACAAATTATGTTCATCAAAATTGGCAATCAATGTAAAGATTCTCTGTGTAACTGATGAAGTTATCAAGAGCTAAAGAAAGGCCGGTGGCCAAGAAGGTGGGTTCAGATGCATCACAGAGGTTTTAGCTATGTGATTAGCTGTTTTGGTAATCAAATCCATGCCATTTTGGGATAATTTGAGGAAGGAAGCTTTGGTTGTATGAGAGAGGGGTCTGCAGGCGATTAGGATCTTAGTGTTGCAATAATGAGGATGGAAATGGCATACTGCGTAGACGCATGCTCATTTTACCAATCAGAGTTTGAGAAAGAAGTCTTGATGTCCATCTTCATGTTCAGCATATTCACTTTGGTTTGAGCCAGCATATTTCCCCAAACAACTCCAAATTTTTTGCATCATTTCAGCATTGTATTTCATATACACCAGGCTCTCCACACTCATCGCGATAGAACATTGTGGAATGTTGCCCATTTCATTTCAGCAATCTAAAGGGAGCACTCCAAACGCCCAACTGTACTTGTGGAATTCTTGTAATCCAGTGTAATTTTTCTTCTGTAAATAAA

Function

symbol description
ncam2 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03791699_03858262.mRNA True 4490 mRNA 0.47 18 3790698 3859234

Neighbor

gene id symbol gene type direction distance location
CI01000009_03770045_03770497 NA coding downstream 20201 3769910 ~ 3770497 (-)
CI01000009_03699312_03715114 APP, APPB, APPA coding downstream 75584 3699312 ~ 3715114 (-)
CI01000009_03668956_03672426 NA coding downstream 118272 3668792 ~ 3672426 (-)
CI01000009_03664045_03666052 NA coding downstream 123961 3663947 ~ 3666737 (-)
CI01000009_03643048_03645741 DCNL2, DCUN1D2, DCUN1D2A coding downstream 143538 3642248 ~ 3647160 (-)
CI01000009_04015167_04016764 NA coding upstream 155771 4015005 ~ 4016837 (-)
CI01000009_04069741_04071278 NA coding upstream 210480 4069714 ~ 4071604 (-)
CI01000009_04196309_04197268 DNAJC28 coding upstream 337075 4196309 ~ 4197268 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding upstream 878995 4738229 ~ 4742426 (-)
CI01000009_04778332_04780190 NA coding upstream 918819 4778053 ~ 4786216 (-)
G52743 NA non-coding downstream 47145 3743327 ~ 3743553 (-)
G52739 NA non-coding downstream 54559 3735823 ~ 3736139 (-)
G52736 NA non-coding downstream 59165 3731313 ~ 3731533 (-)
G52735 NA non-coding downstream 59447 3730900 ~ 3731251 (-)
G52725 NA non-coding downstream 142719 3647714 ~ 3647979 (-)
G52770 NA non-coding upstream 188589 4047823 ~ 4048261 (-)
G52773 NA non-coding upstream 203997 4063231 ~ 4063661 (-)
G52831 NA non-coding upstream 247913 4107147 ~ 4107370 (-)
G52878 NA non-coding upstream 422111 4281345 ~ 4281805 (-)
G52995 NA non-coding upstream 468252 4327486 ~ 4327685 (-)
CI01000009_03261739_03262843 NA other downstream 528741 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 891291 2883688 ~ 2893975 (-)
G52410 NA other downstream 1228165 2551724 ~ 2562533 (-)
G52098 NA other downstream 2383071 1401932 ~ 1407627 (-)
G52828 NA other upstream 358186 4217420 ~ 4231469 (-)
G53515 NA other upstream 1643161 5502395 ~ 5505248 (-)
G55814 NA other upstream 4566587 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 4998918 8856310 ~ 8860563 (-)
G59097 NA other upstream 8428983 12288217 ~ 12289518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038014 ncam2 coding NC_007120.7 CM002893.2 35170335 ~ 35557397 (-)